BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00036516
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi...   202   3e-50
ref|XP_002525630.1| pentatricopeptide repeat-containing protein,...   201   5e-50
ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containi...   194   6e-48
ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|2...   192   2e-47
ref|NP_180537.1| pentatricopeptide repeat-containing protein [Ar...   173   1e-41

>ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  202 bits (513), Expect = 3e-50
 Identities = 96/125 (76%), Positives = 110/125 (88%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           YEQ G+ KEAL LFHELQLSK AKPD+VTLVS LSACAQLGA++ GGWIHVYIKKQG KL
Sbjct: 344 YEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKL 403

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           NCH+TTSLIDMY KCGDL+KAL VF S E+KDV+VWSA+IAGLAMHG G+DAI +F++M+
Sbjct: 404 NCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQ 463

Query: 362 ETNVK 376
           E  VK
Sbjct: 464 EDKVK 468



 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 41/124 (33%), Positives = 70/124 (56%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           + Q G  +EAL LF E++ ++  KP+ +T+V  LSACA+    E G W+H YI++     
Sbjct: 212 FVQGGCPEEALELFQEME-TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGE 270

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           +  ++ +++DMY KCG +E A  +F    +KD+  W+ ++ G A  G    A  +F  M 
Sbjct: 271 SLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMP 330

Query: 362 ETNV 373
             ++
Sbjct: 331 NQDI 334



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/125 (28%), Positives = 58/125 (46%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           Y  S    ++L +F  +       PD+ T    + A ++L  + +G   H  + K     
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS 169

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           +  I  SLI  YAKCG+L     VF +  ++DV  W+++I      G   +A+++F  M 
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 362 ETNVK 376
             NVK
Sbjct: 230 TQNVK 234


>ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535066|gb|EEF36748.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 765

 Score =  201 bits (511), Expect = 5e-50
 Identities = 94/125 (75%), Positives = 112/125 (89%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           YEQ G+ KEALA+FHELQLSK AKPD+VTLVS LSACAQLGAI+ GGWIHVYIKKQ  KL
Sbjct: 340 YEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKL 399

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           NCH+TTSLIDMY+KCG++EKAL++F S +++DV+VWSA+IAGLAMHGRGR AID+F  M+
Sbjct: 400 NCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQ 459

Query: 362 ETNVK 376
           ET V+
Sbjct: 460 ETKVR 464



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/100 (37%), Positives = 61/100 (61%)
 Frame = +2

Query: 14  GRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKLNCHI 193
           G   +AL LF +L  ++  +P+ VT+V  LSACA+   +E G  +  YI++ G  +N  +
Sbjct: 212 GCPDKALELF-QLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVNLTV 270

Query: 194 TTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLA 313
           + +++DMY K G LE A  +F   E+KD++ W+ +I G A
Sbjct: 271 SNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYA 310



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/116 (30%), Positives = 56/116 (48%)
 Frame = +2

Query: 29  ALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKLNCHITTSLI 208
           +L +F  +       P++ T    + A A + ++     IH    K     +  I  SLI
Sbjct: 115 SLLIFIRMLYDSPDFPNKFTFPFVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLI 174

Query: 209 DMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMRETNVK 376
             YA CGDL+ A  VF   E+KDV  W+++I G  + G    A+++F  M+  NV+
Sbjct: 175 HCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMKAENVR 230


>ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
           gi|449470513|ref|XP_004152961.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
           gi|449523079|ref|XP_004168552.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  194 bits (493), Expect = 6e-48
 Identities = 92/125 (73%), Positives = 109/125 (87%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           YEQ+G+ KEALA+F+ELQLSK AKPD+VTLVS LSACAQLGAI+ GGWIHVYIK++G  L
Sbjct: 334 YEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVL 393

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           NCH+ +SL+DMYAKCG LEKALEVF S E++DVYVWSA+IAGL MHGRG+ AID+F  M+
Sbjct: 394 NCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQ 453

Query: 362 ETNVK 376
           E  VK
Sbjct: 454 EAKVK 458



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 35/107 (32%), Positives = 66/107 (61%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           + Q    ++AL LF +++  +   P+ VT+V  LSACA+   +E G W+  YI+++G K+
Sbjct: 202 FAQGNCPEDALELFLKME-RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKV 260

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHG 322
           +  +  +++DMY KCG ++ A ++F    ++DV+ W+ ++ G A  G
Sbjct: 261 DLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMG 307



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 35/124 (28%), Positives = 60/124 (48%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           Y  S    ++  +F +L    +  P++ T    + A ++L A   G  +H    K  F +
Sbjct: 100 YASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGM 159

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           + +I  SL+  Y  CGDL  A  +F+    KDV  W+++I+  A      DA+++F +M 
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219

Query: 362 ETNV 373
             NV
Sbjct: 220 RENV 223


>ref|XP_002314110.1| predicted protein [Populus trichocarpa] gi|222850518|gb|EEE88065.1|
           predicted protein [Populus trichocarpa]
          Length = 738

 Score =  192 bits (488), Expect = 2e-47
 Identities = 91/125 (72%), Positives = 110/125 (88%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           Y+Q+G+ KEALA+F ELQL+K  KP++VTL S L+ACAQLGA++ GGWIHVYIKKQG KL
Sbjct: 339 YQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKL 398

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           N HITTSLIDMY+KCG LEKALEVF S E++DV+VWSA+IAGLAMHG GR AID+F++M+
Sbjct: 399 NFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQ 458

Query: 362 ETNVK 376
           ET VK
Sbjct: 459 ETKVK 463



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 42/107 (39%), Positives = 67/107 (62%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           + Q G  +EAL LF  +++ + A+P++VT+V  LSACA+   +E G W   YI++ G  +
Sbjct: 207 FVQGGSPEEALQLFKRMKM-ENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI 265

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHG 322
           N  ++ +++DMY KCG LE A  +F   E+KD+  W+ +I G A  G
Sbjct: 266 NLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVG 312



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/125 (26%), Positives = 63/125 (50%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           +  S +  + L +F ++    +  P+  T    + A  ++ ++ +G  IH  + K  F  
Sbjct: 105 FASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGS 164

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           +  I+ SLI  Y+  GDL+ A  VF    +KD+  W+++I+G    G   +A+ +F RM+
Sbjct: 165 DLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMK 224

Query: 362 ETNVK 376
             N +
Sbjct: 225 MENAR 229


>ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75100656|sp|O82380.1|PP175_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
           gi|3582328|gb|AAC35225.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253207|gb|AEC08301.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 738

 Score =  173 bits (439), Expect = 1e-41
 Identities = 80/125 (64%), Positives = 102/125 (81%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           YEQ+G+  EAL +FHELQL K  K +Q+TLVS LSACAQ+GA+E G WIH YIKK G ++
Sbjct: 339 YEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM 398

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMR 361
           N H+T++LI MY+KCGDLEK+ EVF S E++DV+VWSA+I GLAMHG G +A+DMF +M+
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQ 458

Query: 362 ETNVK 376
           E NVK
Sbjct: 459 EANVK 463



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 36/105 (34%), Positives = 62/105 (59%)
 Frame = +2

Query: 2   YEQSGRAKEALALFHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKL 181
           + Q G   +AL LF +++ S+  K   VT+V  LSACA++  +E G  +  YI++    +
Sbjct: 207 FVQKGSPDKALELFKKME-SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNV 265

Query: 182 NCHITTSLIDMYAKCGDLEKALEVFRSSEQKDVYVWSAVIAGLAM 316
           N  +  +++DMY KCG +E A  +F + E+KD   W+ ++ G A+
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 31/112 (27%), Positives = 57/112 (50%)
 Frame = +2

Query: 41  FHELQLSKKAKPDQVTLVSALSACAQLGAIESGGWIHVYIKKQGFKLNCHITTSLIDMYA 220
           F ++    +  P++ T    + A A++ ++  G  +H    K     +  +  SLI  Y 
Sbjct: 118 FLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYF 177

Query: 221 KCGDLEKALEVFRSSEQKDVYVWSAVIAGLAMHGRGRDAIDMFARMRETNVK 376
            CGDL+ A +VF + ++KDV  W+++I G    G    A+++F +M   +VK
Sbjct: 178 SCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229