BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035432
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containi...   185   4e-45
ref|XP_002319538.1| predicted protein [Populus trichocarpa] gi|2...   181   4e-44
emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]   173   1e-41
ref|XP_003626292.1| Pentatricopeptide repeat-containing protein ...   170   1e-40
ref|XP_002884507.1| pentatricopeptide repeat-containing protein ...   152   3e-35

>ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  185 bits (469), Expect = 4e-45
 Identities = 91/146 (62%), Positives = 113/146 (77%)
 Frame = -1

Query: 448 ELFKAAKVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTIL 269
           EL  A KVFD MP+KDTISWNS ISG L  G+   GF VFKQ+   G  +FDQATL+T+L
Sbjct: 104 ELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVL 163

Query: 268 SACNYPDKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVV 89
           +AC+ P+  YV  M+HS+V   G E+EI+VGNAL+T+YFRCGC  SGRRVF EM E+NVV
Sbjct: 164 TACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVV 223

Query: 88  TWTAMVSGLAQSEFCEESLRLFLEMR 11
           TWTA++SGL+Q +F EESL+LF +MR
Sbjct: 224 TWTAVISGLSQGQFYEESLKLFGKMR 249



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 39/139 (28%), Positives = 77/139 (55%)
 Frame = -1

Query: 430 KVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACNYP 251
           +VFDEM  K+ ++W ++ISG  +   +    ++F +M+  G    +  T  + L AC+  
Sbjct: 212 RVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRD-GPVDPNSLTYLSSLMACSGL 270

Query: 250 DKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTAMV 71
             +     +H +V + G   ++ + +AL+  Y +CG  +   ++F    E + V+ T ++
Sbjct: 271 QAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVIL 330

Query: 70  SGLAQSEFCEESLRLFLEM 14
            GLAQ+ F EES+++F++M
Sbjct: 331 VGLAQNGFEEESIQVFVKM 349



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 38/144 (26%), Positives = 66/144 (45%)
 Frame = -1

Query: 436 AAKVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACN 257
           A K+F+     D +S   ++ G  + G      +VF +M   G    D   +S IL    
Sbjct: 311 AWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVV-IDPNMISAILGVFG 369

Query: 256 YPDKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTA 77
               L +   +HS++++        V N L+  Y +CG      ++F  M +RN V+W +
Sbjct: 370 IDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNS 429

Query: 76  MVSGLAQSEFCEESLRLFLEMRRE 5
           M++  A+      +L+L+ EMR E
Sbjct: 430 MIAAFARHGNGSRALQLYEEMRLE 453


>ref|XP_002319538.1| predicted protein [Populus trichocarpa] gi|222857914|gb|EEE95461.1|
           predicted protein [Populus trichocarpa]
          Length = 577

 Score =  181 bits (460), Expect = 4e-44
 Identities = 90/148 (60%), Positives = 114/148 (77%)
 Frame = -1

Query: 445 LFKAAKVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILS 266
           L  AAK+FDEMP++DT+SWN MISGFLK G F  GF  FKQMQ+LG  R DQATL+TILS
Sbjct: 8   LTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLTTILS 67

Query: 265 ACNYPDKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVT 86
           AC+ P+  +V  M+H + + +G ++EISVGNAL+T+YF+CG   SG +VF EM ERNV+T
Sbjct: 68  ACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVIT 127

Query: 85  WTAMVSGLAQSEFCEESLRLFLEMRREL 2
           WTA++SGL QSE   +SLRLF+EM   L
Sbjct: 128 WTAIISGLVQSELYRDSLRLFVEMTNGL 155



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 40/139 (28%), Positives = 76/139 (54%)
 Frame = -1

Query: 430 KVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACNYP 251
           +VFDEM  ++ I+W ++ISG ++   +R+   +F +M T G    +  T  + L AC+  
Sbjct: 115 QVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEM-TNGLVEPNSLTYLSSLMACSGL 173

Query: 250 DKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTAMV 71
             L     +H  V + G + +  V +AL+  Y +CG      ++F    + + V+ T ++
Sbjct: 174 QALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIIL 233

Query: 70  SGLAQSEFCEESLRLFLEM 14
           +G AQ+ F EE+++ F++M
Sbjct: 234 AGFAQNGFEEEAMQFFVKM 252



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/140 (25%), Positives = 66/140 (47%)
 Frame = -1

Query: 430 KVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACNYP 251
           ++F+     D +S   +++GF + G      + F +M   G+   D   +S +L      
Sbjct: 216 QIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGT-EIDSNMVSAVLGVFGAD 274

Query: 250 DKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTAMV 71
             L +   +HS+V++        VGN L+  Y +CG  +   +VF  M   N V+W +M+
Sbjct: 275 TSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMI 334

Query: 70  SGLAQSEFCEESLRLFLEMR 11
           +  A+      +L+L+ EMR
Sbjct: 335 AAFARHGDGSRALQLYKEMR 354


>emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  173 bits (439), Expect = 1e-41
 Identities = 84/135 (62%), Positives = 106/135 (78%)
 Frame = -1

Query: 415 MPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACNYPDKLYV 236
           MP+KDTISWNS ISG L  G+   GF VFKQ+   G  +FDQATL+T+L+AC+ P+  YV
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 235 CMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTAMVSGLAQ 56
             M+HS+V   G E+EI+VGNAL+T+YFRCGC  SGRRVF EM E+NVVTWTA++SGL+Q
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 55  SEFCEESLRLFLEMR 11
            +F EESL+LF +MR
Sbjct: 121 GQFYEESLKLFGKMR 135



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 39/139 (28%), Positives = 77/139 (55%)
 Frame = -1

Query: 430 KVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACNYP 251
           +VFDEM  K+ ++W ++ISG  +   +    ++F +M+  G    +  T  + L AC+  
Sbjct: 98  RVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRD-GPVDPNSLTYLSSLMACSGL 156

Query: 250 DKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTAMV 71
             +     +H +V + G   ++ + +AL+  Y +CG  +   ++F    E + V+ T ++
Sbjct: 157 QAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVIL 216

Query: 70  SGLAQSEFCEESLRLFLEM 14
            GLAQ+ F EES+++F++M
Sbjct: 217 VGLAQNGFEEESIQVFVKM 235



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 38/144 (26%), Positives = 66/144 (45%)
 Frame = -1

Query: 436 AAKVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACN 257
           A K+F+     D +S   ++ G  + G      +VF +M   G    D   +S IL    
Sbjct: 197 AWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVV-IDPNMISAILGVFG 255

Query: 256 YPDKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTA 77
               L +   +HS++++        V N L+  Y +CG      ++F  M +RN V+W +
Sbjct: 256 IDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNS 315

Query: 76  MVSGLAQSEFCEESLRLFLEMRRE 5
           M++  A+      +L+L+ EMR E
Sbjct: 316 MIAAFARHGNGSRALQLYEEMRLE 339


>ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355501307|gb|AES82510.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  170 bits (430), Expect = 1e-40
 Identities = 85/151 (56%), Positives = 109/151 (72%), Gaps = 5/151 (3%)
 Frame = -1

Query: 448 ELFKAAKVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGS--CRFDQATLST 275
           E   A  VFD MP++DT+SWN+MISGFL+ G+F   F+ FKQM       CRFD+ATL+T
Sbjct: 92  EFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDKATLTT 151

Query: 274 ILSACN---YPDKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMF 104
           +LS C+         V  M+H +V   G E+EI+VGNAL+T+YF+C CF  GR+VF EM 
Sbjct: 152 MLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQGRKVFDEMI 211

Query: 103 ERNVVTWTAMVSGLAQSEFCEESLRLFLEMR 11
           ERNVVTWTA++SGLAQ+EF E+SLRLF +MR
Sbjct: 212 ERNVVTWTAVISGLAQNEFYEDSLRLFAQMR 242



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 38/139 (27%), Positives = 76/139 (54%)
 Frame = -1

Query: 430 KVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACNYP 251
           KVFDEM  ++ ++W ++ISG  +   + +   +F QM+  GS   +  T  + L AC+  
Sbjct: 205 KVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACSGL 264

Query: 250 DKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTAMV 71
             L     +H ++ + G + ++ + +AL+  Y +CG   +  ++F    E + V+ T ++
Sbjct: 265 QVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLTVIL 324

Query: 70  SGLAQSEFCEESLRLFLEM 14
              AQ+ F EE++++F +M
Sbjct: 325 VAFAQNGFEEEAIQIFTKM 343



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 37/144 (25%), Positives = 70/144 (48%)
 Frame = -1

Query: 436 AAKVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACN 257
           A ++F+     D +S   ++  F + G      ++F +M  LG    D   +S +L    
Sbjct: 305 AWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGM-EVDANMVSAVLGVFG 363

Query: 256 YPDKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTA 77
               L +   +HS++++    +   VGN LV  Y +CG       VFY+M ++N V+W +
Sbjct: 364 VGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNS 423

Query: 76  MVSGLAQSEFCEESLRLFLEMRRE 5
           +++  A+     ++L+ + EMR E
Sbjct: 424 VIAAFARHGDGFKALQFYEEMRVE 447


>ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330347|gb|EFH60766.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 676

 Score =  152 bits (384), Expect = 3e-35
 Identities = 78/149 (52%), Positives = 106/149 (71%)
 Frame = -1

Query: 448 ELFKAAKVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTIL 269
           +L  A K+FDEMP++D IS N +  GFL+  E  +GF + K+M  LGS  FDQATL+ +L
Sbjct: 105 KLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRM--LGSGGFDQATLTIVL 162

Query: 268 SACNYPDKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVV 89
           S C+ P+   V  M+H++ + SG ++EISVGN L+T+YF+CGC  SGR VF EM  RNV+
Sbjct: 163 SVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVI 222

Query: 88  TWTAMVSGLAQSEFCEESLRLFLEMRREL 2
           TWTA++SGL ++E  E+ LRLF  MRR L
Sbjct: 223 TWTAVISGLIENELHEDGLRLFCLMRRGL 251



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 38/138 (27%), Positives = 75/138 (54%)
 Frame = -1

Query: 427 VFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACNYPD 248
           VF EM  ++ I+W ++ISG ++     +G  +F  M+  G    +  T  + L+AC+   
Sbjct: 212 VFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRR-GLVHPNSVTYLSALAACSGSQ 270

Query: 247 KLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTAMVS 68
            +     +H+++ + G E E+ + +AL+  Y +CG  +   ++F    E + V+ T ++ 
Sbjct: 271 MIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVILV 330

Query: 67  GLAQSEFCEESLRLFLEM 14
           GLAQ+   EE+++ F+ M
Sbjct: 331 GLAQNGSEEEAIQFFIRM 348



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 37/141 (26%), Positives = 64/141 (45%)
 Frame = -1

Query: 436 AAKVFDEMPIKDTISWNSMISGFLKIGEFRNGFEVFKQMQTLGSCRFDQATLSTILSACN 257
           A K+F+     D +S   ++ G  + G      + F +M   G    D   +S IL    
Sbjct: 310 AWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAG-VEIDANVVSAILGVSF 368

Query: 256 YPDKLYVCMMMHSVVLRSGCEQEISVGNALVTNYFRCGCFQSGRRVFYEMFERNVVTWTA 77
             + L +   +HS+V++        V N L+  Y +CG     + VF  M +RN V+W +
Sbjct: 369 VDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNS 428

Query: 76  MVSGLAQSEFCEESLRLFLEM 14
           M++  A+      +L+L+ EM
Sbjct: 429 MIAAFARHGHGLAALKLYEEM 449