BLASTX nr result
ID: Cimicifuga21_contig00035388
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00035388
(531 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276130.2| PREDICTED: 26S protease regulatory subunit 6... 112 2e-32
ref|XP_004154554.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease... 112 1e-30
ref|XP_004139931.1| PREDICTED: 26S protease regulatory subunit 6... 112 1e-30
ref|NP_200637.1| regulatory particle triple-A ATPase 3 [Arabidop... 112 1e-30
ref|XP_002523664.1| 26S protease regulatory subunit 6b, putative... 112 2e-30
>ref|XP_002276130.2| PREDICTED: 26S protease regulatory subunit 6B homolog [Vitis
vinifera]
Length = 418
Score = 112 bits (279), Expect(2) = 2e-32
Identities = 64/90 (71%), Positives = 69/90 (76%)
Frame = -3
Query: 271 ELKSLKRGELHAQEERRGRELNRFL*FIS*FMEMVDQNNGIVGSTTGSNY*FGTLTTINR 92
E K+LKR L AQEE + + I FMEMVDQNNGIVGSTTGSNY L+TINR
Sbjct: 64 EQKNLKRELLRAQEEVK--RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 121
Query: 91 ELLKPSASVPLHRHSNALVDVLPPKADSSI 2
ELLKPSASV LHRHSNALVDVLPP+ADSSI
Sbjct: 122 ELLKPSASVALHRHSNALVDVLPPEADSSI 151
Score = 52.4 bits (124), Expect(2) = 2e-32
Identities = 26/40 (65%), Positives = 31/40 (77%), Gaps = 4/40 (10%)
Frame = -1
Query: 381 DTLGFSDQL----DKEDLYGLYKSLQRQIDFVDIQEEYVK 274
D GFSDQ D++DLYG KSLQRQ++F+DIQEEYVK
Sbjct: 23 DIQGFSDQSSSFSDEDDLYGRLKSLQRQLEFIDIQEEYVK 62
>ref|XP_004154554.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit 6B
homolog [Cucumis sativus]
Length = 418
Score = 112 bits (279), Expect(2) = 1e-30
Identities = 64/90 (71%), Positives = 69/90 (76%)
Frame = -3
Query: 271 ELKSLKRGELHAQEERRGRELNRFL*FIS*FMEMVDQNNGIVGSTTGSNY*FGTLTTINR 92
E K+LKR L AQEE + + I FMEMVDQNNGIVGSTTGSNY L+TINR
Sbjct: 64 EQKNLKRELLRAQEEVK--RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 121
Query: 91 ELLKPSASVPLHRHSNALVDVLPPKADSSI 2
ELLKPSASV LHRHSNALVDVLPP+ADSSI
Sbjct: 122 ELLKPSASVALHRHSNALVDVLPPEADSSI 151
Score = 46.2 bits (108), Expect(2) = 1e-30
Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Frame = -1
Query: 381 DTLGFSDQL-DKEDLYGLYKSLQRQIDFVDIQEEYVK 274
D G ++Q D++DLY KSLQRQ++F+DIQEEYVK
Sbjct: 26 DLQGLAEQSSDEDDLYSRLKSLQRQLEFIDIQEEYVK 62
>ref|XP_004139931.1| PREDICTED: 26S protease regulatory subunit 6B homolog [Cucumis
sativus]
Length = 418
Score = 112 bits (279), Expect(2) = 1e-30
Identities = 64/90 (71%), Positives = 69/90 (76%)
Frame = -3
Query: 271 ELKSLKRGELHAQEERRGRELNRFL*FIS*FMEMVDQNNGIVGSTTGSNY*FGTLTTINR 92
E K+LKR L AQEE + + I FMEMVDQNNGIVGSTTGSNY L+TINR
Sbjct: 64 EQKNLKRELLRAQEEVK--RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 121
Query: 91 ELLKPSASVPLHRHSNALVDVLPPKADSSI 2
ELLKPSASV LHRHSNALVDVLPP+ADSSI
Sbjct: 122 ELLKPSASVALHRHSNALVDVLPPEADSSI 151
Score = 46.2 bits (108), Expect(2) = 1e-30
Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Frame = -1
Query: 381 DTLGFSDQL-DKEDLYGLYKSLQRQIDFVDIQEEYVK 274
D G ++Q D++DLY KSLQRQ++F+DIQEEYVK
Sbjct: 26 DLQGLAEQSSDEDDLYSRLKSLQRQLEFIDIQEEYVK 62
>ref|NP_200637.1| regulatory particle triple-A ATPase 3 [Arabidopsis thaliana]
gi|297793353|ref|XP_002864561.1| hypothetical protein
ARALYDRAFT_495939 [Arabidopsis lyrata subsp. lyrata]
gi|28558168|sp|Q9SEI4.1|PRS6B_ARATH RecName: Full=26S
protease regulatory subunit 6B homolog; AltName:
Full=26S protease subunit 6B homolog; AltName: Full=26S
proteasome AAA-ATPase subunit RPT3; AltName:
Full=Protein BMAA insensitive morphology 409; AltName:
Full=Regulatory particle triple-A ATPase subunit 3
gi|6652882|gb|AAF22523.1|AF123392_1 26S proteasome
AAA-ATPase subunit RPT3 [Arabidopsis thaliana]
gi|8777330|dbj|BAA96920.1| 26S proteasome AAA-ATPase
subunit RPT3 [Arabidopsis thaliana]
gi|17979231|gb|AAL49932.1| AT4g10340/F24G24_140
[Arabidopsis thaliana] gi|56382019|gb|AAV85728.1|
At5g58290 [Arabidopsis thaliana]
gi|297310396|gb|EFH40820.1| hypothetical protein
ARALYDRAFT_495939 [Arabidopsis lyrata subsp. lyrata]
gi|332009646|gb|AED97029.1| regulatory particle triple-A
ATPase 3 [Arabidopsis thaliana]
Length = 408
Score = 112 bits (279), Expect(2) = 1e-30
Identities = 64/90 (71%), Positives = 69/90 (76%)
Frame = -3
Query: 271 ELKSLKRGELHAQEERRGRELNRFL*FIS*FMEMVDQNNGIVGSTTGSNY*FGTLTTINR 92
E K+LKR L AQEE + + I FMEMVDQNNGIVGSTTGSNY L+TINR
Sbjct: 54 EQKNLKRELLRAQEEVK--RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 111
Query: 91 ELLKPSASVPLHRHSNALVDVLPPKADSSI 2
ELLKPSASV LHRHSNALVDVLPP+ADSSI
Sbjct: 112 ELLKPSASVALHRHSNALVDVLPPEADSSI 141
Score = 46.2 bits (108), Expect(2) = 1e-30
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = -1
Query: 354 DKEDLYGLYKSLQRQIDFVDIQEEYVK 274
D+EDLYG KSL+RQ++F DIQEEYVK
Sbjct: 26 DEEDLYGRLKSLERQLEFTDIQEEYVK 52
>ref|XP_002523664.1| 26S protease regulatory subunit 6b, putative [Ricinus communis]
gi|223537064|gb|EEF38699.1| 26S protease regulatory
subunit 6b, putative [Ricinus communis]
Length = 415
Score = 112 bits (279), Expect(2) = 2e-30
Identities = 64/90 (71%), Positives = 69/90 (76%)
Frame = -3
Query: 271 ELKSLKRGELHAQEERRGRELNRFL*FIS*FMEMVDQNNGIVGSTTGSNY*FGTLTTINR 92
E K+LKR L AQEE + + I FMEMVDQNNGIVGSTTGSNY L+TINR
Sbjct: 61 EQKNLKRELLRAQEEVK--RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINR 118
Query: 91 ELLKPSASVPLHRHSNALVDVLPPKADSSI 2
ELLKPSASV LHRHSNALVDVLPP+ADSSI
Sbjct: 119 ELLKPSASVALHRHSNALVDVLPPEADSSI 148
Score = 45.8 bits (107), Expect(2) = 2e-30
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = -1
Query: 369 FSD--QLDKEDLYGLYKSLQRQIDFVDIQEEYVK 274
FSD D++DLY KSLQRQ++F+DIQEEYVK
Sbjct: 26 FSDLTNADEDDLYSRLKSLQRQLEFIDIQEEYVK 59