BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035342
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containi...   161   6e-38
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi...   157   7e-37
emb|CBI23556.3| unnamed protein product [Vitis vinifera]              157   7e-37
ref|XP_002321443.1| predicted protein [Populus trichocarpa] gi|2...   151   6e-35
ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   149   3e-34

>ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  161 bits (407), Expect = 6e-38
 Identities = 71/114 (62%), Positives = 93/114 (81%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRA 165
           E A  IF+GM + +DLVSWSAM+SCFANN+ +L+AI  F +MLE G YPNE+CF A IRA
Sbjct: 127 ETARLIFEGMGNKRDLVSWSAMVSCFANNSMELQAIWTFLDMLELGFYPNEYCFAAVIRA 186

Query: 164 CANSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFDRM 3
           C+N+++ W+G +I+G V+KTGY E+++CVGCELID+F KG GDL SA KVFD+M
Sbjct: 187 CSNANHAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKM 240



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = -1

Query: 308 DKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRACANSDNTWIGRV 129
           +++LV+W+ MI+ FA      +AI +F +M  SG+ P+ F +++ + AC       +G+ 
Sbjct: 242 ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 301

Query: 128 IFGSVMKTGYFESNLCVGCELIDLFTK--GMGDLVSARKVFDRM 3
           +   V++ G    ++CVGC L+D++ K    G +  +RKVF+RM
Sbjct: 302 LHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFERM 344



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNR-KLEAITMFYEMLESGHYPNEFCFTAAIR 168
           + +  +F+ M  + +++SW+A+I+ +  +     EAI +F +M+    +PN F F++ ++
Sbjct: 335 DDSRKVFERM-PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIWPNHFSFSSVLK 393

Query: 167 ACANSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFD 9
           AC N  + + G  ++   +K G    N CVG  LI ++ +  G +  ARK FD
Sbjct: 394 ACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARS-GRMEDARKAFD 444


>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  157 bits (398), Expect = 7e-37
 Identities = 70/114 (61%), Positives = 91/114 (79%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRA 165
           E A  IF+GM + +DLVSWSAM+SCFANN+ + +AI  F +MLE G YPNE+CF A IRA
Sbjct: 78  ETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRA 137

Query: 164 CANSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFDRM 3
           C+N++  W+G +I+G V+KTGY E+++CVGCELID+F KG GDL SA KVFD+M
Sbjct: 138 CSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKM 191



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/104 (31%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = -1

Query: 308 DKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRACANSDNTWIGRV 129
           +++LV+W+ MI+ FA      +AI +F +M  SG+ P+ F +++ + AC       +G+ 
Sbjct: 193 ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 252

Query: 128 IFGSVMKTGYFESNLCVGCELIDLFTK--GMGDLVSARKVFDRM 3
           +   V++ G    ++CVGC L+D++ K    G +  +RKVF++M
Sbjct: 253 LHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 295



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNR-KLEAITMFYEMLESGHYPNEFCFTAAIR 168
           + +  +F+ M  + +++SW+A+I+ +  +     EAI +F +M+     PN F F++ ++
Sbjct: 286 DDSRKVFEQM-PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLK 344

Query: 167 ACANSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFD 9
           AC N  + + G  ++   +K G    N CVG  LI ++ +  G +  ARK FD
Sbjct: 345 ACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARS-GRMEDARKAFD 395



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/79 (35%), Positives = 48/79 (60%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRA 165
           E A  +F  M +D++++SW++MI+ FA +     A+ MF++MLE+G  PNE  + A + A
Sbjct: 489 EAAFQVFNEM-EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 547

Query: 164 CANSDNTWIGRVIFGSVMK 108
           C++      G+  F S+ K
Sbjct: 548 CSHVGMISEGQKHFNSMYK 566


>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  157 bits (398), Expect = 7e-37
 Identities = 70/114 (61%), Positives = 91/114 (79%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRA 165
           E A  IF+GM + +DLVSWSAM+SCFANN+ + +AI  F +MLE G YPNE+CF A IRA
Sbjct: 96  ETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRA 155

Query: 164 CANSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFDRM 3
           C+N++  W+G +I+G V+KTGY E+++CVGCELID+F KG GDL SA KVFD+M
Sbjct: 156 CSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKM 209



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/104 (31%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = -1

Query: 308 DKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRACANSDNTWIGRV 129
           +++LV+W+ MI+ FA      +AI +F +M  SG+ P+ F +++ + AC       +G+ 
Sbjct: 211 ERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQ 270

Query: 128 IFGSVMKTGYFESNLCVGCELIDLFTK--GMGDLVSARKVFDRM 3
           +   V++ G    ++CVGC L+D++ K    G +  +RKVF++M
Sbjct: 271 LHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQM 313



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNR-KLEAITMFYEMLESGHYPNEFCFTAAIR 168
           + +  +F+ M  + +++SW+A+I+ +  +     EAI +F +M+     PN F F++ ++
Sbjct: 304 DDSRKVFEQM-PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLK 362

Query: 167 ACANSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFD 9
           AC N  + + G  ++   +K G    N CVG  LI ++ +  G +  ARK FD
Sbjct: 363 ACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARS-GRMEDARKAFD 413



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/79 (35%), Positives = 48/79 (60%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRA 165
           E A  +F  M +D++++SW++MI+ FA +     A+ MF++MLE+G  PNE  + A + A
Sbjct: 507 EAAFQVFNEM-EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 565

Query: 164 CANSDNTWIGRVIFGSVMK 108
           C++      G+  F S+ K
Sbjct: 566 CSHVGMISEGQKHFNSMYK 584


>ref|XP_002321443.1| predicted protein [Populus trichocarpa] gi|222868439|gb|EEF05570.1|
           predicted protein [Populus trichocarpa]
          Length = 723

 Score =  151 bits (381), Expect = 6e-35
 Identities = 66/105 (62%), Positives = 85/105 (80%)
 Frame = -1

Query: 317 MNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRACANSDNTWI 138
           M + +DLVSWSA+ISC+ANN +  EAI+ F++MLE G YPNE+CFT   RAC+N +N  +
Sbjct: 1   MGNKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISL 60

Query: 137 GRVIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFDRM 3
           G++IFG ++KTGYFES++CVGC LID+F KG GDL SA KVFDRM
Sbjct: 61  GKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRM 105



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRA 165
           E A  +F  M  D+++V+W+ MI+ F       +A+ +F +M+ SG+ P+ F  +  + A
Sbjct: 96  ESAYKVFDRM-PDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154

Query: 164 CANSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGM--GDLVSARKVFDRM 3
           CA      +GR     VMK+G  + ++CVGC L+D++ K +  G +  ARKVFDRM
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSG-LDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRM 209



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
 Frame = -1

Query: 302 DLVSWSAMISCFANNNR-KLEAITMFYEMLESGHYPNEFCFTAAIRACANSDNTWIGRVI 126
           +++SW+A+I+ +  +     EAI +F EM++    PN F F++ ++ACAN  + W+G  +
Sbjct: 213 NVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV 272

Query: 125 FGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFD 9
           +  V+K      N CVG  LI ++++  G++ +ARK FD
Sbjct: 273 YALVVKMRLASIN-CVGNSLISMYSR-CGNMENARKAFD 309


>ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  149 bits (375), Expect = 3e-34
 Identities = 67/114 (58%), Positives = 88/114 (77%)
 Frame = -1

Query: 344 EKANSIFKGMNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRA 165
           EKA SIF+ M   +DL+SWSAM+SCFANNN    A+  F +M+E+G+YPNE+CF AA RA
Sbjct: 118 EKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRA 177

Query: 164 CANSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFDRM 3
           C+ ++   +G  IFG V+KTGY +S++CVGC LID+F KG GDLVSA KVF++M
Sbjct: 178 CSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKM 231



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
 Frame = -1

Query: 338 ANSIFKGMNDDKDLVSWSAMISCFANNNRKLEAITMFYEMLESGHYPNEFCFTAAIRACA 159
           A  +F+ M  +++ V+W+ MI+         EAI +F +M+ SG+ P+ F  +  I ACA
Sbjct: 224 AFKVFEKM-PERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACA 282

Query: 158 NSDNTWIGRVIFGSVMKTGYFESNLCVGCELIDLFTKGM--GDLVSARKVFDRM 3
           N +   +G+ +    ++ G    + CVGC LI+++ K    G + +ARK+FD++
Sbjct: 283 NMELLLLGQQLHSQAIRHG-LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI 335



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
 Frame = -1

Query: 308 DKDLVSWSAMISCFANNNR-KLEAITMFYEMLESGHYPNEFCFTAAIRACANSDNTWIGR 132
           D ++ SW+AMI+ +        EA+ +F  M+ +   PN F F++ ++ACAN     IG 
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 131 VIFGSVMKTGYFESNLCVGCELIDLFTKGMGDLVSARKVFD 9
            +F   +K G+   N CV   LI ++ +  G +  ARK FD
Sbjct: 397 QVFTHAVKLGFSSVN-CVANSLISMYARS-GRIDDARKAFD 435