BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035289
         (277 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    85   5e-15
gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subc...    80   2e-13
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               79   3e-13
emb|CCH50966.1| T4.5 [Malus x robusta]                                 79   4e-13
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      79   5e-13

>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
 Frame = -2

Query: 273 FVVKDNISGRTLFQGQTRDGLYPFPSSSAVGHSK---GVFLGVKASSSLWHRRLGHPSQA 103
           FVVK+N++GR L QG   +GLYP         S       +GV+A++  WH RLGHPS  
Sbjct: 411 FVVKENLTGRILLQGVVENGLYPLAGCKTFHKSLTCLSTTIGVRANADTWHSRLGHPSSV 470

Query: 102 IMHNLVSSNKIPVIG-SLSFPFCVECQLGKSKRLP 1
           I ++L  SNK+ V G S    FC  CQLGK+K+LP
Sbjct: 471 IFNSLFHSNKLSVKGSSTKLEFCSACQLGKAKQLP 505


>gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2074

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
 Frame = -2

Query: 273  FVVKDNISGRTLFQGQTRDGLYPFPSSSAVGHSKGVFLGVKASSSLWHRRLGHPSQAIMH 94
            F +KD ++   L +G  R+GLYP P+SS +  SK V   +K + S WH RLGHPS AI+ 
Sbjct: 1371 FAIKDQVTKNLLLRGPCRNGLYPLPTSS-LATSKQVLGAIKPTMSRWHSRLGHPSLAIVQ 1429

Query: 93   NLVSSNKIPVIGSLS-FPFCVECQLGKSKRLP 1
             +VSSN +P +G ++    C  CQ  KS +LP
Sbjct: 1430 KVVSSNNLPCLGDVNESGVCNACQQAKSHQLP 1461


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
 Frame = -2

Query: 273 FVVKDNISGRTLFQGQTRDGLYPF--PSSSAVGHSKGVFLGVKASSSLWHRRLGHPSQAI 100
           F VKD  +G+ L+ G++ +GLYPF  PS ++   S   ++  + S+  WH RLGH S  I
Sbjct: 439 FCVKDLKTGKMLYHGKSENGLYPFRFPSKTSKVSSSLAYVSSRVSAETWHSRLGHASSTI 498

Query: 99  MHNLVSSNKIPVIGSLSFPFCVECQLGKS 13
           +  ++S+  +PV+GS +F FC  C LGKS
Sbjct: 499 VSKVLSNKAVPVLGSSNFSFCQSCPLGKS 527


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 43/96 (44%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
 Frame = -2

Query: 273 FVVKDNISGRTLFQGQTRDGLYPF-----PSSSAVGHSKGVFLGVKASSSLWHRRLGHPS 109
           F VKD  +G+ LFQG +  GLYPF        S +  S    +  KA    WHRRLGHPS
Sbjct: 681 FYVKDLSTGKMLFQGPSEGGLYPFYWNASNGVSGIAISPTALMIAKADIHTWHRRLGHPS 740

Query: 108 QAIMHNLVSSNKIPVIGSL-SFPFCVECQLGKSKRL 4
              +H++V  N +PVIG + +   C  CQLGKS RL
Sbjct: 741 GGTLHSVVHKNHLPVIGYVNNMSVCTACQLGKSYRL 776


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
 Frame = -2

Query: 273 FVVKDNISGRTLFQGQTRDGLYPFPSSSAVGHSKGVFLGVKASSSLWHRRLGHPSQAIMH 94
           F +KD I+  TL +G   +GLYP P+S++   SK V   +K + S+WH RLGHPS  I+ 
Sbjct: 405 FAIKDQITKNTLLRGPCCNGLYPLPASTS--SSKQVLGAIKPTVSIWHSRLGHPSWQIVQ 462

Query: 93  NLVSSNKIPVIG-SLSFPFCVECQLGKSKRLP 1
            +VS N +P +G S     C  CQ GKS +LP
Sbjct: 463 KVVSHNNLPCLGESKELGVCDACQKGKSHQLP 494