BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035286
         (263 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]                    63   2e-08
gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...    63   3e-08
gb|ABA97534.2| retrotransposon protein, putative, unclassified [...    62   4e-08
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...    60   1e-07
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...    60   1e-07

>dbj|BAK61840.1| gag-pol polyprotein [Citrus unshiu]
          Length = 1542

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 34/74 (45%), Positives = 45/74 (60%)
 Frame = +1

Query: 40  KFTMIGKNLDEKIKEELMEFLKSNCNVFAWSMADMPGIDREHAVYKLALRKNAKPVIQKK 219
           +   IG  L E IK EL+++L+S  ++FAWS  DMP ID   A +KLA+RK A PV QK+
Sbjct: 728 RMVKIGSGLGETIKGELVKYLQSYADIFAWSHEDMPRIDHGIAYHKLAIRKGAMPVRQKR 787

Query: 220 RKVRIIYEEAVRNE 261
           R       EA+  E
Sbjct: 788 RCFNQERYEAINAE 801


>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 26/74 (35%), Positives = 52/74 (70%)
 Frame = +1

Query: 40  KFTMIGKNLDEKIKEELMEFLKSNCNVFAWSMADMPGIDREHAVYKLALRKNAKPVIQKK 219
           K+ +IG+NL+++++EE+++ +K+N +VFAWS  ++ G++R    + LA++   KP  QK 
Sbjct: 284 KYILIGENLEKEVEEEILKVVKANTDVFAWSPEELEGVERSLIEHNLAIKPEHKPKKQKL 343

Query: 220 RKVRIIYEEAVRNE 261
           R++ I  ++A + E
Sbjct: 344 RRISIDRQQAAKAE 357


>gb|ABA97534.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 964

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 28/72 (38%), Positives = 47/72 (65%)
 Frame = +1

Query: 40  KFTMIGKNLDEKIKEELMEFLKSNCNVFAWSMADMPGIDREHAVYKLALRKNAKPVIQKK 219
           K   IG NLD K ++ L+ FL++N N+FAW  +DMP + RE   ++LA+R+ A+P+ QK 
Sbjct: 534 KTAKIGGNLDTKYEDALVSFLRTNSNIFAWKPSDMPRVRREVIEHRLAVRRGAQPIWQKV 593

Query: 220 RKVRIIYEEAVR 255
           ++  +  +  +R
Sbjct: 594 QRQALEQQAIIR 605


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/74 (37%), Positives = 48/74 (64%)
 Frame = +1

Query: 40   KFTMIGKNLDEKIKEELMEFLKSNCNVFAWSMADMPGIDREHAVYKLALRKNAKPVIQKK 219
            KF +IG+NL++ I+EE+++ +K N  VFAWS  ++ G+DR    + LA++   KP  QK 
Sbjct: 933  KFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKL 992

Query: 220  RKVRIIYEEAVRNE 261
            R++    ++A + E
Sbjct: 993  RRMSTDRQQAAKIE 1006


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/74 (37%), Positives = 48/74 (64%)
 Frame = +1

Query: 40   KFTMIGKNLDEKIKEELMEFLKSNCNVFAWSMADMPGIDREHAVYKLALRKNAKPVIQKK 219
            KF +IG+NL++ I+EE+++ +K N  VFAWS  ++ G+DR    + LA++   KP  QK 
Sbjct: 933  KFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKL 992

Query: 220  RKVRIIYEEAVRNE 261
            R++    ++A + E
Sbjct: 993  RRMSTDRQQAAKIE 1006