BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035257
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   112   3e-23
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...   106   2e-21
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         105   3e-21
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...   102   3e-20
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...   102   3e-20

>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
           Arabidopsis thaliana BAC gb|AF080119 and is a member of
           the reverse transcriptase family PF|00078 [Arabidopsis
           thaliana]
          Length = 1415

 Score =  112 bits (280), Expect = 3e-23
 Identities = 52/101 (51%), Positives = 69/101 (68%)
 Frame = +2

Query: 2   NKTSTIFCSHCHEGKSTRLPFSLSISKTSKPLQLLHIDLWGPAPVLSNNGYKYYASIVDD 181
           ++TS + C  C  GKS+RLPF +S S+   PL  +H DLWGP+PV+SN G KYYA  VDD
Sbjct: 482 SRTSPV-CEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDD 540

Query: 182 WSRYCWLFPLHLKSHFSIIFQHFKANIENLLSTSIKTIRTD 304
           +SRY W +PLH KS F  +F  F+  +EN L+T IK  ++D
Sbjct: 541 YSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSD 581


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score =  106 bits (265), Expect = 2e-21
 Identities = 48/101 (47%), Positives = 67/101 (66%)
 Frame = +2

Query: 2   NKTSTIFCSHCHEGKSTRLPFSLSISKTSKPLQLLHIDLWGPAPVLSNNGYKYYASIVDD 181
           NK+++  C  C  GKS+RLPF  S    S+PL+ +H DLWGPAPV S  G++YY   +D+
Sbjct: 473 NKSTSKMCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDN 532

Query: 182 WSRYCWLFPLHLKSHFSIIFQHFKANIENLLSTSIKTIRTD 304
            SR+CW +PL  KS F  +F  F++ +ENLL T I T ++D
Sbjct: 533 RSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSD 573


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  105 bits (263), Expect = 3e-21
 Identities = 50/101 (49%), Positives = 67/101 (66%)
 Frame = +2

Query: 2   NKTSTIFCSHCHEGKSTRLPFSLSISKTSKPLQLLHIDLWGPAPVLSNNGYKYYASIVDD 181
           ++TS + C  C  GKSTRL F  S  +  KPL  +H DLWGP+PV+SN G+KYYA  VDD
Sbjct: 484 SRTSPV-CEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVVSNQGFKYYAVFVDD 542

Query: 182 WSRYCWLFPLHLKSHFSIIFQHFKANIENLLSTSIKTIRTD 304
           +SR+ W FPL +KS F  +F  ++  +EN L T IK  ++D
Sbjct: 543 FSRFSWFFPLRMKSKFISVFIAYQKLVENQLGTKIKEFQSD 583


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score =  102 bits (254), Expect = 3e-20
 Identities = 47/101 (46%), Positives = 60/101 (59%)
 Frame = +2

Query: 2   NKTSTIFCSHCHEGKSTRLPFSLSISKTSKPLQLLHIDLWGPAPVLSNNGYKYYASIVDD 181
           NK     C  CH GKSTRLPF LS    S+PL+ +H DLWGP+P  S  G++YY   +D 
Sbjct: 485 NKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYVVFIDH 544

Query: 182 WSRYCWLFPLHLKSHFSIIFQHFKANIENLLSTSIKTIRTD 304
           +SR+ W +PL LKS F   F  F+  +EN L   IK  + D
Sbjct: 545 YSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCD 585


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score =  102 bits (254), Expect = 3e-20
 Identities = 47/101 (46%), Positives = 64/101 (63%)
 Frame = +2

Query: 2   NKTSTIFCSHCHEGKSTRLPFSLSISKTSKPLQLLHIDLWGPAPVLSNNGYKYYASIVDD 181
           NKTS   C  C  GKSTRLPF  S   +++PL+ +H DLWGP+P+ S  G++YYA  +D 
Sbjct: 491 NKTSKSLCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLWGPSPITSVQGFRYYAVFIDH 550

Query: 182 WSRYCWLFPLHLKSHFSIIFQHFKANIENLLSTSIKTIRTD 304
           +SR+ W++PL LKS F  IF  F   +EN L+  I   + D
Sbjct: 551 YSRFSWIYPLKLKSDFYNIFVAFHKLVENQLNHKISVFQCD 591