BLASTX nr result
ID: Cimicifuga21_contig00035255
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00035255
(510 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa Japonica Group] 91 1e-36
emb|CAH67874.1| OSIGBa0153E02-OSIGBa0093I20.3 [Oryza sativa Indi... 91 1e-36
gb|ABA95230.1| retrotransposon protein, putative, unclassified [... 91 4e-36
gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group] 89 2e-35
emb|CAH66946.1| B0809H07.1 [Oryza sativa Indica Group] 89 2e-35
>emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa Japonica Group]
Length = 1015
Score = 90.5 bits (223), Expect(3) = 1e-36
Identities = 43/78 (55%), Positives = 55/78 (70%)
Frame = -2
Query: 509 DTLHIAKVKSNLGRTFDIKDLGFLHYFFGIEVAHSRHGISLSQWKYILSLLSDTGMLGFP 330
DT IA++K N+ + F++KDLG L YF GIE+A S GI LSQ KY+L LL DTGMLG
Sbjct: 691 DTQEIAQLKENISKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLCDTGMLGCR 750
Query: 329 PTQIPMDLNHRLHANIGD 276
P P++ NH+L A +GD
Sbjct: 751 PASTPIEQNHKLCAELGD 768
Score = 84.7 bits (208), Expect(3) = 1e-36
Identities = 42/78 (53%), Positives = 53/78 (67%)
Frame = -3
Query: 235 YLPDYRPGISFAVSVVTQFMHGRRFTHMDAIDRILRYLKSSLGFGLFYPSDGSFDLVSYS 56
YL RP I++AVSVV+++MH R HMDA+ RILRYLK S G GL++ +G + Y
Sbjct: 784 YLCHTRPDITYAVSVVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLGVEGYC 843
Query: 55 DVDYIGSLSDRRSTSGIC 2
D D+ SL DRRSTSG C
Sbjct: 844 DADWASSLDDRRSTSGYC 861
Score = 23.9 bits (50), Expect(3) = 1e-36
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 258 YQRLVGHLIYL 226
YQRLVG LIYL
Sbjct: 775 YQRLVGRLIYL 785
>emb|CAH67874.1| OSIGBa0153E02-OSIGBa0093I20.3 [Oryza sativa Indica Group]
Length = 806
Score = 90.5 bits (223), Expect(3) = 1e-36
Identities = 43/78 (55%), Positives = 55/78 (70%)
Frame = -2
Query: 509 DTLHIAKVKSNLGRTFDIKDLGFLHYFFGIEVAHSRHGISLSQWKYILSLLSDTGMLGFP 330
DT IA++K N+ + F++KDLG L YF GIE+A S GI LSQ KY+L LL DTGMLG
Sbjct: 500 DTQEIAQLKENISKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLCDTGMLGCR 559
Query: 329 PTQIPMDLNHRLHANIGD 276
P P++ NH+L A +GD
Sbjct: 560 PASTPIEQNHKLCAELGD 577
Score = 84.7 bits (208), Expect(3) = 1e-36
Identities = 42/78 (53%), Positives = 53/78 (67%)
Frame = -3
Query: 235 YLPDYRPGISFAVSVVTQFMHGRRFTHMDAIDRILRYLKSSLGFGLFYPSDGSFDLVSYS 56
YL RP I++AVSVV+++MH R HMDA+ RILRYLK S G GL++ +G + Y
Sbjct: 593 YLCHTRPDITYAVSVVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLGVEGYC 652
Query: 55 DVDYIGSLSDRRSTSGIC 2
D D+ SL DRRSTSG C
Sbjct: 653 DADWASSLDDRRSTSGYC 670
Score = 23.9 bits (50), Expect(3) = 1e-36
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 258 YQRLVGHLIYL 226
YQRLVG LIYL
Sbjct: 584 YQRLVGRLIYL 594
>gb|ABA95230.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 936
Score = 90.9 bits (224), Expect(3) = 4e-36
Identities = 44/78 (56%), Positives = 55/78 (70%)
Frame = -2
Query: 509 DTLHIAKVKSNLGRTFDIKDLGFLHYFFGIEVAHSRHGISLSQWKYILSLLSDTGMLGFP 330
D L I+++K NL + F++KDLG L YF GIE+A S GI LSQ KY+L LLSDTGMLG
Sbjct: 630 DCLEISRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLSDTGMLGCR 689
Query: 329 PTQIPMDLNHRLHANIGD 276
P P++ NH+L A GD
Sbjct: 690 PASTPIEQNHKLCAESGD 707
Score = 82.4 bits (202), Expect(3) = 4e-36
Identities = 40/78 (51%), Positives = 53/78 (67%)
Frame = -3
Query: 235 YLPDYRPGISFAVSVVTQFMHGRRFTHMDAIDRILRYLKSSLGFGLFYPSDGSFDLVSYS 56
YL RP I++AVSVV+++MH R HMD + RILRYLK+S G G+++ +G D+ Y
Sbjct: 723 YLCHTRPDITYAVSVVSRYMHDPRSGHMDVVYRILRYLKASPGKGIWFKKNGHLDVEGYC 782
Query: 55 DVDYIGSLSDRRSTSGIC 2
D D+ L DRRSTSG C
Sbjct: 783 DADWGSCLDDRRSTSGYC 800
Score = 23.9 bits (50), Expect(3) = 4e-36
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 258 YQRLVGHLIYL 226
YQRLVG LIYL
Sbjct: 714 YQRLVGRLIYL 724
>gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1299
Score = 89.4 bits (220), Expect(3) = 2e-35
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = -2
Query: 509 DTLHIAKVKSNLGRTFDIKDLGFLHYFFGIEVAHSRHGISLSQWKYILSLLSDTGMLGFP 330
D L I ++K NL + F++KDLG L YF GIE+A S GI +SQ KY+L LLS+TGMLG
Sbjct: 993 DCLEITRLKRNLSKEFEVKDLGQLRYFLGIEIARSPRGIVISQRKYVLDLLSETGMLGCC 1052
Query: 329 PTQIPMDLNHRLHANIGD 276
P P+D NH+L A GD
Sbjct: 1053 PVSTPIDQNHKLCAESGD 1070
Score = 81.6 bits (200), Expect(3) = 2e-35
Identities = 39/78 (50%), Positives = 53/78 (67%)
Frame = -3
Query: 235 YLPDYRPGISFAVSVVTQFMHGRRFTHMDAIDRILRYLKSSLGFGLFYPSDGSFDLVSYS 56
YL RP I++AVS+V+++MH R +HM+A+ RILRYLK S G GL++ +G + Y
Sbjct: 1086 YLCHTRPDITYAVSMVSRYMHDPRSSHMEAVYRILRYLKGSPGKGLWFKKNGHLKIEGYC 1145
Query: 55 DVDYIGSLSDRRSTSGIC 2
D D+ L DRRSTSG C
Sbjct: 1146 DADWASCLDDRRSTSGYC 1163
Score = 23.9 bits (50), Expect(3) = 2e-35
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 258 YQRLVGHLIYL 226
YQRLVG LIYL
Sbjct: 1077 YQRLVGRLIYL 1087
>emb|CAH66946.1| B0809H07.1 [Oryza sativa Indica Group]
Length = 1120
Score = 89.4 bits (220), Expect(3) = 2e-35
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = -2
Query: 509 DTLHIAKVKSNLGRTFDIKDLGFLHYFFGIEVAHSRHGISLSQWKYILSLLSDTGMLGFP 330
D L I ++K NL + F++KDLG L YF GIE+A S GI +SQ KY+L LLS+TGMLG
Sbjct: 814 DCLEITRLKRNLSKEFEVKDLGQLRYFLGIEIARSPRGIVISQRKYVLDLLSETGMLGCC 873
Query: 329 PTQIPMDLNHRLHANIGD 276
P P+D NH+L A GD
Sbjct: 874 PVSTPIDQNHKLCAESGD 891
Score = 81.6 bits (200), Expect(3) = 2e-35
Identities = 39/78 (50%), Positives = 53/78 (67%)
Frame = -3
Query: 235 YLPDYRPGISFAVSVVTQFMHGRRFTHMDAIDRILRYLKSSLGFGLFYPSDGSFDLVSYS 56
YL RP I++AVS+V+++MH R +HM+A+ RILRYLK S G GL++ +G + Y
Sbjct: 907 YLCHTRPDITYAVSMVSRYMHDPRSSHMEAVYRILRYLKGSPGKGLWFKKNGHLKIEGYC 966
Query: 55 DVDYIGSLSDRRSTSGIC 2
D D+ L DRRSTSG C
Sbjct: 967 DADWASCLDDRRSTSGYC 984
Score = 23.9 bits (50), Expect(3) = 2e-35
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 258 YQRLVGHLIYL 226
YQRLVG LIYL
Sbjct: 898 YQRLVGRLIYL 908