BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035254
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35069.3| unnamed protein product [Vitis vinifera]              183   1e-44
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...   183   1e-44
ref|XP_002321356.1| predicted protein [Populus trichocarpa] gi|2...   179   3e-43
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...   177   1e-42
ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Ara...   176   1e-42

>emb|CBI35069.3| unnamed protein product [Vitis vinifera]
          Length = 1309

 Score =  183 bits (465), Expect = 1e-44
 Identities = 91/113 (80%), Positives = 104/113 (92%)
 Frame = -3

Query: 340 DVLLGRLPIMLRSCRCVLVGKDEAQLAKLGECPLDPGGYFVVKGTEKVVLIQEQLSKNRI 161
           DV++GR+PIMLRSC CVL  KDEA+LA+LGECPLDPGGYFVVKGTEKV+LIQEQLSKNRI
Sbjct: 146 DVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRI 205

Query: 160 IIDSDKKGRLMASVTSSTEMTKSKTNIVIDKEKIYLQLNTFTALIPIMVVMKA 2
           IID+DKKG + ASVTSSTE TKSKT IV++KEKI+LQLN FT+ IPIM+VMKA
Sbjct: 206 IIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKA 258


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
           vinifera]
          Length = 1142

 Score =  183 bits (465), Expect = 1e-44
 Identities = 91/113 (80%), Positives = 104/113 (92%)
 Frame = -3

Query: 340 DVLLGRLPIMLRSCRCVLVGKDEAQLAKLGECPLDPGGYFVVKGTEKVVLIQEQLSKNRI 161
           DV++GR+PIMLRSC CVL  KDEA+LA+LGECPLDPGGYFVVKGTEKV+LIQEQLSKNRI
Sbjct: 128 DVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRI 187

Query: 160 IIDSDKKGRLMASVTSSTEMTKSKTNIVIDKEKIYLQLNTFTALIPIMVVMKA 2
           IID+DKKG + ASVTSSTE TKSKT IV++KEKI+LQLN FT+ IPIM+VMKA
Sbjct: 188 IIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKA 240


>ref|XP_002321356.1| predicted protein [Populus trichocarpa] gi|222868352|gb|EEF05483.1|
           predicted protein [Populus trichocarpa]
          Length = 1141

 Score =  179 bits (453), Expect = 3e-43
 Identities = 89/113 (78%), Positives = 102/113 (90%)
 Frame = -3

Query: 340 DVLLGRLPIMLRSCRCVLVGKDEAQLAKLGECPLDPGGYFVVKGTEKVVLIQEQLSKNRI 161
           DV++GR+PIMLRSC CVL GK+EA+LA+LGECPLDPGGYFVVKGTEKV+LIQEQLSKNRI
Sbjct: 127 DVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRI 186

Query: 160 IIDSDKKGRLMASVTSSTEMTKSKTNIVIDKEKIYLQLNTFTALIPIMVVMKA 2
           IID+DKKG + ASVTSSTE TKSKT I+++KEK+YL LN F   IPIMVVMKA
Sbjct: 187 IIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKA 239


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
           lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
           ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score =  177 bits (448), Expect = 1e-42
 Identities = 87/113 (76%), Positives = 101/113 (89%)
 Frame = -3

Query: 340 DVLLGRLPIMLRSCRCVLVGKDEAQLAKLGECPLDPGGYFVVKGTEKVVLIQEQLSKNRI 161
           D ++GR+PIMLRSCRCVL GKDE +LA+LGECPLDPGGYFV+KGTEKV+LIQEQLSKNRI
Sbjct: 139 DFIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRI 198

Query: 160 IIDSDKKGRLMASVTSSTEMTKSKTNIVIDKEKIYLQLNTFTALIPIMVVMKA 2
           IIDSDKKG + ASVTSSTEMTKSKT I ++KEKIYL L+ F   IPI++V+KA
Sbjct: 199 IIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKKIPIVIVLKA 251


>ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
           gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
           III subunit C2 [Arabidopsis thaliana]
          Length = 1161

 Score =  176 bits (447), Expect = 1e-42
 Identities = 86/113 (76%), Positives = 102/113 (90%)
 Frame = -3

Query: 340 DVLLGRLPIMLRSCRCVLVGKDEAQLAKLGECPLDPGGYFVVKGTEKVVLIQEQLSKNRI 161
           +V++GR+PIMLRSCRCVL GKDE +LA+LGECPLDPGGYF++KGTEKV+LIQEQLSKNRI
Sbjct: 139 NVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRI 198

Query: 160 IIDSDKKGRLMASVTSSTEMTKSKTNIVIDKEKIYLQLNTFTALIPIMVVMKA 2
           IIDSDKKG + ASVTSSTEMTKSKT I ++KEKIYL L+ F   IPI++V+KA
Sbjct: 199 IIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKA 251