BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035114
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   103   2e-20
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]             100   2e-19
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    96   2e-18
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    90   2e-16
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    88   8e-16

>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  103 bits (256), Expect = 2e-20
 Identities = 55/123 (44%), Positives = 72/123 (58%)
 Frame = -2

Query: 369 SRYFHMSTVVKMNRININKIRDANGQWVEGRIDVSNTIVEHFKQLFTTSNPDLRIGDLDI 190
           S++FH  T  +  R  I  + D NG W     D+ N  V +F+ LFTT+NP +    L  
Sbjct: 136 SKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEALGE 195

Query: 189 IDPIISPEDNEELTKDVTLEEVRSALFAMDPHKAPGPDGFTPLFYQKYWDIIHLDLLSTI 10
           +  +I+   N+ LT D T  EVR+ALF + P KAPGPDG T LF+QK W II  DLLS +
Sbjct: 196 VQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLV 255

Query: 9   KSF 1
            SF
Sbjct: 256 NSF 258


>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
          Length = 1023

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 52/123 (42%), Positives = 70/123 (56%)
 Frame = -2

Query: 369 SRYFHMSTVVKMNRININKIRDANGQWVEGRIDVSNTIVEHFKQLFTTSNPDLRIGDLDI 190
           S+YFH  T  +  R  I  + D NG+W     DV +  V +F+ LF  SNP      L  
Sbjct: 202 SKYFHALTKQRRARNRIIGLHDENGKWFAEDKDVQHIAVSYFETLFNKSNPQNIAESLSE 261

Query: 189 IDPIISPEDNEELTKDVTLEEVRSALFAMDPHKAPGPDGFTPLFYQKYWDIIHLDLLSTI 10
           +  +I+ + N+ LT   T +EVR+ALF M P KAPGPDG T LF+QK W  I +D+L  +
Sbjct: 262 VKTLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGMTALFFQKPWATIKMDMLFLV 321

Query: 9   KSF 1
            SF
Sbjct: 322 NSF 324


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
 Frame = -2

Query: 363 YFHMSTVVKMNRININKIRDANGQWVEGRIDVSNTIVEHFKQLFTTSN-PDLRIGDLDII 187
           YFH +T  +    N++ I D +GQ       +++TI  +F+ +FTTSN  DL++   + +
Sbjct: 295 YFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQ-EAL 353

Query: 186 DPIISPEDNEELTKDVTLEEVRSALFAMDPHKAPGPDGFTPLFYQKYWDIIHLDLLSTIK 7
            PIIS   NEEL K  +L E++ ALF++   KAPGPDGF+  F+  YWDII  D+   I+
Sbjct: 354 SPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIR 413

Query: 6   SF 1
           SF
Sbjct: 414 SF 415


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 41/121 (33%), Positives = 77/121 (63%), Gaps = 1/121 (0%)
 Frame = -2

Query: 369 SRYFHMSTVVKMNRININKIRDANGQWVEGRIDVSNTIVEHFKQLFTTSNPDLRIGDLDI 190
           +RYFH+STV++ +R  I+ +++ +G+W+   ++V   ++ ++K LF+  +       L  
Sbjct: 358 TRYFHLSTVIRRSRNRIDMLQNNDGEWISNPMEVKAMVLGYWKHLFSEDSVQSNFCHLPR 417

Query: 189 -IDPIISPEDNEELTKDVTLEEVRSALFAMDPHKAPGPDGFTPLFYQKYWDIIHLDLLST 13
              P I+ +D E++ + ++  EV  AL +M P KAPGPDGF PLFYQ++WD++  +++  
Sbjct: 418 DFFPQITADDFEKMMRPLSEVEVTLALKSMKPFKAPGPDGFQPLFYQRFWDLVKPNVMHL 477

Query: 12  I 10
           +
Sbjct: 478 V 478


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
 Frame = -2

Query: 369 SRYFHMSTVVKMNRININKIRDANGQWVEGRIDVSNTIVEHFKQLFTTSNP-DLRIGD-L 196
           ++YFH     +  R  +  + DA+G W E   D+     ++F  +FT++NP D+++ D L
Sbjct: 354 TKYFHHKASQRKKRNFVKGLFDASGTWCEEVDDIECVFTDYFTSIFTSTNPSDVQLNDVL 413

Query: 195 DIIDPIISPEDNEELTKDVTLEEVRSALFAMDPHKAPGPDGFTPLFYQKYWDIIHLDLLS 16
             +DP+++ E N  L K  + EE+  AL  M P KAPGPDG   +FYQK+W II  D+  
Sbjct: 414 CCVDPVVTEECNTWLLKPFSKEELYVALSQMHPCKAPGPDGMHAIFYQKFWHIIGDDVTQ 473

Query: 15  TIKS 4
            + S
Sbjct: 474 FVSS 477