BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00035080
         (788 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...   363   3e-98
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm...   344   1e-92
ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-li...   294   1e-77
ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabi...   289   4e-76
ref|XP_003601821.1| DNA polymerase alpha subunit B [Medicago tru...   283   2e-74

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score =  363 bits (931), Expect = 3e-98
 Identities = 179/262 (68%), Positives = 213/262 (81%)
 Frame = -2

Query: 787 KCLTFSINFKLNASDLVSSWEVYYLNRQLDGTVVHNSHMDGFLLHLQSEQKEAIIKEEAY 608
           KCLTF IN+KL+ SDLVSSWEVYYLNRQLD +VV N+ MDGFLLHLQ+EQKEA+IKEE +
Sbjct: 27  KCLTFCINYKLSPSDLVSSWEVYYLNRQLDESVVGNALMDGFLLHLQNEQKEAVIKEEPH 86

Query: 607 PHIYNSNDVDMILSDEREETREDVIGTPTGRQERMDTEPFEFTPGTNGIVPSSGKPSRLS 428
            HIY+SNDVDMILSDE EE +ED++GTP+ R  R   +PF+    TNG   S GKPS   
Sbjct: 87  LHIYSSNDVDMILSDEHEEIKEDILGTPSDRSGRHHADPFDSAQRTNGNSSSYGKPS--- 143

Query: 427 SHMTPFGQRTNKFVVQFTLNKLSEKENGTREHELVDHEDDVIRRVQPSERCSLEVQKSRP 248
           +H+TPFG+RT+KFVVQ T+N     ENG  E++  + +DD+IRRVQPS+RCSL V  SRP
Sbjct: 144 NHVTPFGKRTSKFVVQLTVNNPPSAENGKNENKFENVDDDIIRRVQPSKRCSLLVHGSRP 203

Query: 247 ESGCRFMYDRIEDKFNSLENRIKRQSDAFVTSGLYEEPMDPTLASQKSLFSVGMICCDGE 68
             GCRFMYDRIED+FNSLENRIK+ + A V +GLY+EP DPT+ASQKS+F+ GMICCDGE
Sbjct: 204 GPGCRFMYDRIEDRFNSLENRIKKHTTALVATGLYKEPTDPTVASQKSVFATGMICCDGE 263

Query: 67  GRLNEKSILLQGSVEHSGGQRV 2
           GRLNEKSILLQ SV+HSGGQRV
Sbjct: 264 GRLNEKSILLQSSVQHSGGQRV 285


>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
           gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
           putative [Ricinus communis]
          Length = 621

 Score =  344 bits (883), Expect = 1e-92
 Identities = 167/262 (63%), Positives = 208/262 (79%)
 Frame = -2

Query: 787 KCLTFSINFKLNASDLVSSWEVYYLNRQLDGTVVHNSHMDGFLLHLQSEQKEAIIKEEAY 608
           KCLTF IN+ L  +DLVSSWEVYYLNRQLD + V N  MDGFLLHLQ+EQKEAIIKEE  
Sbjct: 26  KCLTFCINYNLKPADLVSSWEVYYLNRQLDESTVQNGEMDGFLLHLQNEQKEAIIKEEPD 85

Query: 607 PHIYNSNDVDMILSDEREETREDVIGTPTGRQERMDTEPFEFTPGTNGIVPSSGKPSRLS 428
            HIY+S DVDMIL+DE E+ +E+V GTPT   +++++EPF+    + G   SSGK S+  
Sbjct: 86  LHIYSSKDVDMILNDEGEDLKEEVPGTPTDESQKLNSEPFDSIIKSTGNGYSSGKRSK-- 143

Query: 427 SHMTPFGQRTNKFVVQFTLNKLSEKENGTREHELVDHEDDVIRRVQPSERCSLEVQKSRP 248
            H+TPFG+RT+KFVV+F +N L + ENG  EH   + EDD+I+RVQP ++CS  V  S P
Sbjct: 144 -HVTPFGRRTDKFVVKFNINNLPDTENGDNEHVRENMEDDIIKRVQPRKKCSFVVHGSGP 202

Query: 247 ESGCRFMYDRIEDKFNSLENRIKRQSDAFVTSGLYEEPMDPTLASQKSLFSVGMICCDGE 68
           E GCRFMYDRIED+FN+L+NRI++ + A V SGLYEEP DPT+ASQ+++F+VGMICCDGE
Sbjct: 203 EPGCRFMYDRIEDRFNALDNRIRKHAAALVASGLYEEPTDPTVASQRNVFAVGMICCDGE 262

Query: 67  GRLNEKSILLQGSVEHSGGQRV 2
           GRLNEKS+LLQ S+EHSGGQRV
Sbjct: 263 GRLNEKSVLLQSSIEHSGGQRV 284


>ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-like [Cucumis sativus]
           gi|449486914|ref|XP_004157440.1| PREDICTED: DNA
           polymerase alpha subunit B-like [Cucumis sativus]
          Length = 622

 Score =  294 bits (753), Expect = 1e-77
 Identities = 146/264 (55%), Positives = 189/264 (71%), Gaps = 2/264 (0%)
 Frame = -2

Query: 787 KCLTFSINFKLNASDLVSSWEVYYLNRQLDGTVVHNSHMDGFLLHLQSEQKEAIIKEEAY 608
           KC+TF +N+ L  SD+VSSWEVYYLNR LDG+VV    +DGFL HLQ+EQKE +IK E  
Sbjct: 25  KCVTFCVNYNLKPSDIVSSWEVYYLNRLLDGSVVELEQLDGFLQHLQNEQKETVIKGEPD 84

Query: 607 PHIYNSNDVDMILSDEREETREDVIGTPTGRQERMDTEPFEFTPGTNGIVPSSGKPSRLS 428
            H+Y+S DVD+IL+DE E+  ED++ TP G+ + +  E  + TP TN  + SSGKPS+  
Sbjct: 85  LHVYSSKDVDVILNDENEDLNEDILKTPNGKSQSLHKERLDLTPYTNEGLFSSGKPSK-- 142

Query: 427 SHMTPFGQRTNKFVVQFTLNKLSEKENGTREHELVDHEDDVIRRVQPSERCSLEVQKS-- 254
            H TPFGQRT KFVV+F +N + +     +     + ED +I++V+P + CSL V  S  
Sbjct: 143 -HETPFGQRTEKFVVRFNINNMPDMVTAVKVDNSENDEDTIIKKVRPLQGCSLTVHGSGF 201

Query: 253 RPESGCRFMYDRIEDKFNSLENRIKRQSDAFVTSGLYEEPMDPTLASQKSLFSVGMICCD 74
             E  CRFMYD+ ED+FN+L+NRI R + A   SGLYEE +DPT+ASQKS+F+VGMI CD
Sbjct: 202 GLEPNCRFMYDKDEDRFNALDNRIMRHAKALAASGLYEEAVDPTVASQKSIFAVGMIYCD 261

Query: 73  GEGRLNEKSILLQGSVEHSGGQRV 2
           GEG LN+KSILLQ S+ HSGGQRV
Sbjct: 262 GEGHLNDKSILLQSSIAHSGGQRV 285


>ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp.
           lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha
           subunit B family [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score =  289 bits (740), Expect = 4e-76
 Identities = 145/263 (55%), Positives = 191/263 (72%), Gaps = 1/263 (0%)
 Frame = -2

Query: 787 KCLTFSINFKLNASDLVSSWEVYYLNRQLDGTVVHNSHMDGFLLHLQSEQKEAIIK-EEA 611
           +C+T  IN+ LN SDLVSSWE+Y+LNRQL    V    MDGF+LHLQ+EQKE+I++ EEA
Sbjct: 27  RCVTLCINYSLNPSDLVSSWELYHLNRQLLDQTVKKDEMDGFVLHLQNEQKESIMRAEEA 86

Query: 610 YPHIYNSNDVDMILSDEREETREDVIGTPTGRQERMDTEPFEFTPGTNGIVPSSGKPSRL 431
             H+Y++ DVDM+L   +E+T E+++ TPT   +R+  +PF+    +     S+GK    
Sbjct: 87  GLHLYSNRDVDMLLDGVQEDT-EEIVTTPTNESQRLHPDPFDSISRSRDYGYSTGKSV-- 143

Query: 430 SSHMTPFGQRTNKFVVQFTLNKLSEKENGTREHELVDHEDDVIRRVQPSERCSLEVQKSR 251
             H+TPFG R  KFVV+F +  ++  ENG   +E+ + EDD+I+RVQ S+RCSLEV  S 
Sbjct: 144 -GHVTPFGSRIEKFVVKFNVGNVAPAENGN-SNEIENSEDDIIKRVQTSQRCSLEVNGSG 201

Query: 250 PESGCRFMYDRIEDKFNSLENRIKRQSDAFVTSGLYEEPMDPTLASQKSLFSVGMICCDG 71
           PE GCRFMYDR ED+FN LENRI R +DAF  SGLYEE +DP +ASQ+S+F+VGMICCDG
Sbjct: 202 PEPGCRFMYDRTEDRFNVLENRIVRHADAFAASGLYEEQVDPAVASQRSIFAVGMICCDG 261

Query: 70  EGRLNEKSILLQGSVEHSGGQRV 2
           EG LN+KS+LLQ S E + GQRV
Sbjct: 262 EGHLNDKSVLLQSSAERTSGQRV 284


>ref|XP_003601821.1| DNA polymerase alpha subunit B [Medicago truncatula]
           gi|355490869|gb|AES72072.1| DNA polymerase alpha subunit
           B [Medicago truncatula]
          Length = 616

 Score =  283 bits (725), Expect = 2e-74
 Identities = 140/265 (52%), Positives = 193/265 (72%), Gaps = 3/265 (1%)
 Frame = -2

Query: 787 KCLTFSINFKLNASDLVSSWEVYYLNRQLDGTVVHNSHMDGFLLHLQSEQKEAIIKEEAY 608
           KCLTF IN+ L  SDLVSSWEVYYLNRQLD  +V N+ M+GF+LHLQ+  K+ IIKEE  
Sbjct: 25  KCLTFCINYSLTPSDLVSSWEVYYLNRQLDEPIVQNAEMEGFMLHLQNNVKDDIIKEETG 84

Query: 607 PHIYNSNDVDMILSDEREETREDVIGTPTGRQERMDTEPFEFTPGTNGIVPSSGKPSRLS 428
            H+Y+  DV+MIL+D+  +T++D   TPT  ++ + + P   TP   G + +SGKP+ L 
Sbjct: 85  LHLYSIGDVEMILNDD--DTKDDTPSTPTNNRQDVYS-PIHDTPSLYGNILASGKPADL- 140

Query: 427 SHMTPFGQRTNKFVVQFTLNKLSEKENGTREHELVDHEDD---VIRRVQPSERCSLEVQK 257
             +TPF +RT++F V+F++N + + ENG +E    + E+D   ++ ++   +RCSL +  
Sbjct: 141 --VTPFSKRTDRFAVKFSINTIPDVENGKQELNHENEENDEYNIVSKIVSRKRCSLVIHG 198

Query: 256 SRPESGCRFMYDRIEDKFNSLENRIKRQSDAFVTSGLYEEPMDPTLASQKSLFSVGMICC 77
           S P+ GCRFMYDR EDK N++ENRIK+ + A V SGLYEEP DP++AS +S FS+GMICC
Sbjct: 199 SGPKPGCRFMYDRTEDKINAIENRIKKHARALVASGLYEEPTDPSIASPRSFFSIGMICC 258

Query: 76  DGEGRLNEKSILLQGSVEHSGGQRV 2
           DGEGRLNEKS++LQ S+EHSGG+ V
Sbjct: 259 DGEGRLNEKSVMLQSSIEHSGGECV 283