BLASTX nr result

ID: Cimicifuga21_contig00034723 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034723
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534244.1| WD-repeat protein, putative [Ricinus communi...    64   2e-08
ref|XP_003526075.1| PREDICTED: WD repeat-containing protein 44-l...    63   2e-08
ref|XP_003539589.1| PREDICTED: WD repeat-containing protein 44-l...    63   3e-08
ref|XP_002329147.1| predicted protein [Populus trichocarpa] gi|2...    62   6e-08
ref|XP_002317512.1| predicted protein [Populus trichocarpa] gi|2...    60   1e-07

>ref|XP_002534244.1| WD-repeat protein, putative [Ricinus communis]
            gi|223525645|gb|EEF28134.1| WD-repeat protein, putative
            [Ricinus communis]
          Length = 944

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 29/43 (67%), Positives = 36/43 (83%)
 Frame = -3

Query: 403  PRPSFDLSNGMAQERSALGMVIVTASLKGEIRIFQNFGLPVKV 275
            PR S D+++GM+Q  SA GMVIVTA L+GEIR FQNFGLPV++
Sbjct: 902  PRSSVDIASGMSQNMSAYGMVIVTAGLRGEIRTFQNFGLPVRI 944


>ref|XP_003526075.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]
          Length = 863

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = -3

Query: 403 PRPSFDLSNGMAQERSALGMVIVTASLKGEIRIFQNFGLPVKV 275
           PR S DLSNG+ Q  SA GMVIVTASL+GEI+IFQNFGLP+ +
Sbjct: 821 PRVSVDLSNGVNQNMSAWGMVIVTASLQGEIKIFQNFGLPLGI 863


>ref|XP_003539589.1| PREDICTED: WD repeat-containing protein 44-like [Glycine max]
          Length = 766

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = -3

Query: 409 QIPRPSFDLSNGMAQERSALGMVIVTASLKGEIRIFQNFGLPVKV 275
           Q PR S D SNG++++ SA GMVIVTA L+GEIR FQNFGLP+++
Sbjct: 722 QSPRVSMDFSNGVSKKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 766


>ref|XP_002329147.1| predicted protein [Populus trichocarpa] gi|222869816|gb|EEF06947.1|
           predicted protein [Populus trichocarpa]
          Length = 799

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/43 (65%), Positives = 35/43 (81%)
 Frame = -3

Query: 403 PRPSFDLSNGMAQERSALGMVIVTASLKGEIRIFQNFGLPVKV 275
           P  S D+SNG+++  SA GMVIVTA L+GEIR FQNFGLPV++
Sbjct: 757 PHASVDISNGLSESVSAYGMVIVTAGLRGEIRTFQNFGLPVRI 799


>ref|XP_002317512.1| predicted protein [Populus trichocarpa] gi|222860577|gb|EEE98124.1|
           predicted protein [Populus trichocarpa]
          Length = 882

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 394 SFDLSNGMAQERSALGMVIVTASLKGEIRIFQNFGLPVKV 275
           S D+SNG++Q  SA GMVIVTA L+GEIR FQNFGLPV++
Sbjct: 843 SVDISNGLSQNVSAYGMVIVTAGLRGEIRTFQNFGLPVRI 882


Top