BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034719
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containi...   155   4e-36
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
emb|CBI20961.3| unnamed protein product [Vitis vinifera]              146   2e-33
ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi...   146   2e-33
ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33

>ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  155 bits (391), Expect = 4e-36
 Identities = 69/126 (54%), Positives = 89/126 (70%)
 Frame = -2

Query: 379 GALELGEWIHRYVERNKFYHNITVCNALIHMYAKCGCIDKAMAVFKAMREPSVVSWNTLI 200
           GALELG WI+ Y  R++      VCNAL+ MYAKCGCID+A+ +F  M E  V+SW+T++
Sbjct: 264 GALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMV 323

Query: 199 SGLAIHGRGEEAIELFTEMEETKGVMPDDITFVGLLNACAHTGLVERAWTYFQDMQTVYG 20
            GLA HGR +EA++LFTEME    V P+ ITFVGLL+AC+H GL++    YF  M  VYG
Sbjct: 324 GGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYG 383

Query: 19  IRPKIE 2
           I P +E
Sbjct: 384 IEPGVE 389



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 32/142 (22%)
 Frame = -2

Query: 376 ALELGEWIHRYVERNKFYHNITVCNALIHMY----------------------------- 284
           AL+LG+ +H +V R+    N  V N+LI MY                             
Sbjct: 133 ALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVIS 192

Query: 283 --AKCGCIDKAMAVFKAMREPSVVSWNTLISGLAIHGRGEEAIELFTEMEETKGVMPDDI 110
             A+ G + KA AVF +M + +VVSW  L+SG    G    A+E F  M + +G  PDD+
Sbjct: 193 AHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLM-QMEGFEPDDV 251

Query: 109 TFVGLLNACAHTGLVERA-WTY 47
           + V +L ACA  G +E   W Y
Sbjct: 252 SIVAVLPACAQLGALELGRWIY 273


>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  146 bits (368), Expect = 2e-33
 Identities = 71/126 (56%), Positives = 88/126 (69%)
 Frame = -2

Query: 379 GALELGEWIHRYVERNKFYHNITVCNALIHMYAKCGCIDKAMAVFKAMREPSVVSWNTLI 200
           GALELG+WIH Y ++  F  NI VCNALI MYAKCG ID+   +F  M E  V+SW+T+I
Sbjct: 263 GALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMI 322

Query: 199 SGLAIHGRGEEAIELFTEMEETKGVMPDDITFVGLLNACAHTGLVERAWTYFQDMQTVYG 20
            GLA HGR  EAIELF EM++ K + P+ ITFVGLL+ACAH GL+     YF+ M+  Y 
Sbjct: 323 VGLANHGRAHEAIELFQEMQKAK-IEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYN 381

Query: 19  IRPKIE 2
           I P +E
Sbjct: 382 IEPGVE 387



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 31/140 (22%)
 Frame = -2

Query: 370 ELGEWIHRYVERNKFYHNITVCNALIHMYAKCGCIDKAMAVFKAMREPSVVSWNTLISGL 191
           +LG+ +H +V +     N  V N+L+ MY KC  +D A  VF+ M E   VSWNTLISG 
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGH 193

Query: 190 AIHGRGEEAIELFTEMEETK------------------------------GVMPDDITFV 101
              G+   A  +F EM++                                G+ PD+I+ V
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLV 253

Query: 100 GLLNACAHTGLVERA-WTYF 44
            +L ACA  G +E   W +F
Sbjct: 254 SVLPACAQLGALELGKWIHF 273


>emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  146 bits (368), Expect = 2e-33
 Identities = 71/126 (56%), Positives = 87/126 (69%)
 Frame = -2

Query: 379 GALELGEWIHRYVERNKFYHNITVCNALIHMYAKCGCIDKAMAVFKAMREPSVVSWNTLI 200
           GALELG+WIH Y ++  F  NI VCNALI MYAKCG ID+   +F  M+E  V+SW+T+I
Sbjct: 279 GALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMI 338

Query: 199 SGLAIHGRGEEAIELFTEMEETKGVMPDDITFVGLLNACAHTGLVERAWTYFQDMQTVYG 20
            GLA HGR  EAIELF EM++ K + P  ITFVGLL ACAH GL+     YF+ M+  Y 
Sbjct: 339 VGLANHGRAREAIELFQEMQKAK-IEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYN 397

Query: 19  IRPKIE 2
           I P +E
Sbjct: 398 IEPGVE 403



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
 Frame = -2

Query: 370 ELGEWIHRYVERNKFYHNITVCNALIHMYAKCGCIDKAMAVFKAM--REPSVVSWNTLIS 197
           +LG+ +H +V +     N  V N+L+ MY KC  +D A  VF+ M  R+ ++ SW  ++S
Sbjct: 179 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVS 238

Query: 196 GLAIHGRGEEAIELFTEMEETKGVMPDDITFVGLLNACAHTGLVE 62
           G A  G   +A+E F  M+   G+ PD+I+ V +L  CA  G +E
Sbjct: 239 GYARIGCYADALEFFRRMQMV-GIEPDEISLVSVLPDCAQLGALE 282


>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  146 bits (368), Expect = 2e-33
 Identities = 71/126 (56%), Positives = 87/126 (69%)
 Frame = -2

Query: 379 GALELGEWIHRYVERNKFYHNITVCNALIHMYAKCGCIDKAMAVFKAMREPSVVSWNTLI 200
           GALELG+WIH Y ++  F  NI VCNALI MYAKCG ID+   +F  M+E  V+SW+T+I
Sbjct: 263 GALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMI 322

Query: 199 SGLAIHGRGEEAIELFTEMEETKGVMPDDITFVGLLNACAHTGLVERAWTYFQDMQTVYG 20
            GLA HGR  EAIELF EM++ K + P  ITFVGLL ACAH GL+     YF+ M+  Y 
Sbjct: 323 VGLANHGRAREAIELFQEMQKAK-IEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYN 381

Query: 19  IRPKIE 2
           I P +E
Sbjct: 382 IEPGVE 387



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 42/120 (35%), Positives = 62/120 (51%)
 Frame = -2

Query: 370 ELGEWIHRYVERNKFYHNITVCNALIHMYAKCGCIDKAMAVFKAMREPSVVSWNTLISGL 191
           +LG+ +H +V +     N  V N+L+ MY KC  +D A  VF+ M E   VSWNTLISG 
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGH 193

Query: 190 AIHGRGEEAIELFTEMEETKGVMPDDITFVGLLNACAHTGLVERAWTYFQDMQTVYGIRP 11
              G+   A  +F EM++         ++  +++  A  G    A  +F+ MQ V GI P
Sbjct: 194 VRLGQMRRARAIFEEMQD-----KTIFSWTAIVSGYARIGCYADALEFFRRMQMV-GIEP 247


>ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
           gi|449529652|ref|XP_004171812.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  145 bits (366), Expect = 3e-33
 Identities = 69/126 (54%), Positives = 93/126 (73%)
 Frame = -2

Query: 379 GALELGEWIHRYVERNKFYHNITVCNALIHMYAKCGCIDKAMAVFKAMREPSVVSWNTLI 200
           GALELG+WI  Y+ER++ +  + V NALI M+AKCG I KA+ +F+AM E ++VSW ++I
Sbjct: 248 GALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVI 307

Query: 199 SGLAIHGRGEEAIELFTEMEETKGVMPDDITFVGLLNACAHTGLVERAWTYFQDMQTVYG 20
            G+A+HGRG+EA  LF EM  + GV PDD+ F+GLL+AC+H+GLVER   YF  M   Y 
Sbjct: 308 VGMAMHGRGQEATCLFEEM-TSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYK 366

Query: 19  IRPKIE 2
           + PKIE
Sbjct: 367 LVPKIE 372



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
 Frame = -2

Query: 373 LELGEWIHRYVERNKFYHNITVCNALIHMYAKC-GCIDKAMAVFKAMREPSVVSWNTLIS 197
           L LG+ +H  V +  F  +I V N ++HMY+ C G I+ A  VF  M +   V+W+ +I 
Sbjct: 148 LNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIG 207

Query: 196 GLAIHGRGEEAIELFTEMEETKGVMPDDITFVGLLNACAHTGLVE 62
           G A  GR  EA+ LF EM+  + V PD+IT V +L+AC   G +E
Sbjct: 208 GYARVGRSTEAVALFREMQMAE-VCPDEITMVSMLSACTDLGALE 251