BLASTX nr result

ID: Cimicifuga21_contig00034627 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034627
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO18461.1| hypothetical protein [Oryza sativa Japonica Group]      78   8e-13
ref|NP_001060325.2| Os07g0624100 [Oryza sativa Japonica Group] g...    78   8e-13
ref|NP_001051732.2| Os03g0822100 [Oryza sativa Japonica Group] g...    78   8e-13
ref|XP_002451486.1| hypothetical protein SORBIDRAFT_04g002725 [S...    74   2e-11
gb|AEF33496.1| putative transposase [Saccharum hybrid cultivar R...    72   4e-11

>gb|AAO18461.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 669

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
 Frame = -1

Query: 340 WNTTYLMLDAAIPYQRVF-ELFFSDSDFEYIPSVLDWKNAEVTREILKVCYKSVKLCSGI 164
           WN+TYLML+AA P+ R +  L   D +++Y PS   W+ + +   ILKV Y +  + SG 
Sbjct: 476 WNSTYLMLNAAFPFMRAYASLAVQDKNYKYAPSPDQWERSTIVSGILKVLYDATMVVSGS 535

Query: 163 KYVSSSALFHQLSNICLVISKYET--DPSYTSTIGSMKSKINEYW 35
            Y +S+  FH++  I LV+ K  +  D    S +  MK K ++YW
Sbjct: 536 LYPTSNLYFHEMWKIKLVLDKEHSNNDTEVASMVQKMKDKFDKYW 580


>ref|NP_001060325.2| Os07g0624100 [Oryza sativa Japonica Group]
           gi|255677983|dbj|BAF22239.2| Os07g0624100 [Oryza sativa
           Japonica Group]
          Length = 762

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
 Frame = -1

Query: 340 WNTTYLMLDAAIPYQRVF-ELFFSDSDFEYIPSVLDWKNAEVTREILKVCYKSVKLCSGI 164
           WN+TYLML+AA P+ R +  L   + +++Y PS   W+ A +   ILKV Y +  + SG 
Sbjct: 439 WNSTYLMLNAAFPFMRAYASLVVQEKNYKYAPSPDQWERATIVSGILKVLYDATMVVSGS 498

Query: 163 KYVSSSALFHQLSNICLVISKYET--DPSYTSTIGSMKSKINEYW 35
            Y +S+  FH++  I LV+ K  +  D    S +  MK K ++YW
Sbjct: 499 LYPTSNLYFHEMWKIKLVLDKERSNNDTEVASMVKKMKDKFDKYW 543


>ref|NP_001051732.2| Os03g0822100 [Oryza sativa Japonica Group]
           gi|108711807|gb|ABF99602.1| BED zinc finger family
           protein, expressed [Oryza sativa Japonica Group]
           gi|108711808|gb|ABF99603.1| BED zinc finger family
           protein, expressed [Oryza sativa Japonica Group]
           gi|215704882|dbj|BAG94910.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|255675011|dbj|BAF13646.2| Os03g0822100 [Oryza sativa
           Japonica Group]
          Length = 612

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
 Frame = -1

Query: 340 WNTTYLMLDAAIPYQRVF-ELFFSDSDFEYIPSVLDWKNAEVTREILKVCYKSVKLCSGI 164
           WN+TYLML+AA P+ R +  L   D +++Y PS   W+ + +   ILKV Y +  + SG 
Sbjct: 419 WNSTYLMLNAAFPFMRAYASLAVQDKNYKYAPSPDQWERSTIVSGILKVLYDATMVVSGS 478

Query: 163 KYVSSSALFHQLSNICLVISKYET--DPSYTSTIGSMKSKINEYW 35
            Y +S+  FH++  I LV+ K  +  D    S +  MK K ++YW
Sbjct: 479 LYPTSNLYFHEMWKIKLVLDKEHSNNDTEVASMVQKMKDKFDKYW 523


>ref|XP_002451486.1| hypothetical protein SORBIDRAFT_04g002725 [Sorghum bicolor]
           gi|241931317|gb|EES04462.1| hypothetical protein
           SORBIDRAFT_04g002725 [Sorghum bicolor]
          Length = 604

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/105 (35%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
 Frame = -1

Query: 340 WNTTYLMLDAAIPYQRVF-ELFFSDSDFEYIPSVLDWKNAEVTREILKVCYKSVKLCSGI 164
           WN+TY M+ +A+P++  F EL   DS++ Y PS  DW+ A    ++LKV  K+ K+ SG 
Sbjct: 320 WNSTYDMIQSAMPFKDAFLELKVKDSNYTYCPSSQDWQRANAVCKLLKVFKKATKVVSGS 379

Query: 163 KYVSSSALFHQLSNICLVISKYETDPSYT--STIGSMKSKINEYW 35
            Y +S+  FHQ+ ++  V+ +    P+ T  + +  M++K ++YW
Sbjct: 380 TYPTSNLYFHQIWSVRQVLEEEAFSPNETIAAMVLEMQAKFDKYW 424


>gb|AEF33496.1| putative transposase [Saccharum hybrid cultivar R570]
          Length = 607

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 35/105 (33%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
 Frame = -1

Query: 340 WNTTYLMLDAAIPYQRVF-ELFFSDSDFEYIPSVLDWKNAEVTREILKVCYKSVKLCSGI 164
           WN+T  M+++A+P++  F EL   DS++ Y PS  DW+ A    ++LKV  K++++ SG 
Sbjct: 324 WNSTCDMIESAMPFKEAFLELKVKDSNYSYCPSSQDWERANAVCKLLKVFKKAMEVVSGT 383

Query: 163 KYVSSSALFHQLSNICLVISKYETDPSYT--STIGSMKSKINEYW 35
            Y +S+  FH++ +I  V+ +    P+ T  + +  M++K ++YW
Sbjct: 384 SYPTSNLYFHEIWSIKQVLEEEAFSPNETIVTMVSEMQAKFDKYW 428


Top