BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034478
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ65807.1| polyprotein [Citrus sinensis]                         150   1e-34
gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]           144   6e-33
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...   144   1e-32
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...   144   1e-32
gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]         142   2e-32

>emb|CAJ65807.1| polyprotein [Citrus sinensis]
          Length = 533

 Score =  150 bits (378), Expect = 1e-34
 Identities = 74/117 (63%), Positives = 88/117 (75%)
 Frame = -2

Query: 352 KHHLRTVLQILREQKLFAKFSKCHFWERQVRFLGHVISSEGIAVDLXXXXXXXXXKQPTN 173
           + HLRT+LQ LR+++L+AKFSKC FW  +V FLGHVIS+EGI VD          ++PTN
Sbjct: 17  EEHLRTILQTLRQKQLYAKFSKCEFWLDKVVFLGHVISAEGIYVDPQKIEAVVNWERPTN 76

Query: 172 AMEVRSLLGLVGYYRRFIEKFSLIAAPLTKLTRKNIQFQWNSECEKTFQELKARLIS 2
             EVRS LGL GYYRRF+E FS IA PLT+LTRKN +FQWN +CEK FQELKA L S
Sbjct: 77  VTEVRSFLGLAGYYRRFVEGFSKIAIPLTRLTRKNAKFQWNDDCEKGFQELKACLTS 133


>gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]
          Length = 1554

 Score =  144 bits (364), Expect = 6e-33
 Identities = 66/115 (57%), Positives = 85/115 (73%)
 Frame = -2

Query: 346  HLRTVLQILREQKLFAKFSKCHFWERQVRFLGHVISSEGIAVDLXXXXXXXXXKQPTNAM 167
            HLRTVLQ L++ KL+AKFSKC FW + V FLGH++S +GI VD           +PT+  
Sbjct: 912  HLRTVLQTLKDNKLYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTGKIEAMQNWPRPTSPT 971

Query: 166  EVRSLLGLVGYYRRFIEKFSLIAAPLTKLTRKNIQFQWNSECEKTFQELKARLIS 2
            E+RS LGL GYYRRF+E FS IA+PLTKLT+K ++F+W+  CEK+FQE K RLI+
Sbjct: 972  EIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTVKFRWSEACEKSFQEFKKRLIT 1026


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score =  144 bits (362), Expect = 1e-32
 Identities = 67/115 (58%), Positives = 86/115 (74%)
 Frame = -2

Query: 346  HLRTVLQILREQKLFAKFSKCHFWERQVRFLGHVISSEGIAVDLXXXXXXXXXKQPTNAM 167
            HLRTVLQ L++++L+AKFSKC FW + V FLGH++S +GI VD           +PT+  
Sbjct: 833  HLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPT 892

Query: 166  EVRSLLGLVGYYRRFIEKFSLIAAPLTKLTRKNIQFQWNSECEKTFQELKARLIS 2
            E+RS LGL GYYRRF+E FS IA+PLTKLT+K  +FQW+  CEK+FQELK RLI+
Sbjct: 893  EIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTGKFQWSEACEKSFQELKKRLIT 947


>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score =  144 bits (362), Expect = 1e-32
 Identities = 67/115 (58%), Positives = 86/115 (74%)
 Frame = -2

Query: 346  HLRTVLQILREQKLFAKFSKCHFWERQVRFLGHVISSEGIAVDLXXXXXXXXXKQPTNAM 167
            HLRTVLQ L++++L+AKFSKC FW + V FLGH++S +GI VD           +PT+  
Sbjct: 827  HLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPT 886

Query: 166  EVRSLLGLVGYYRRFIEKFSLIAAPLTKLTRKNIQFQWNSECEKTFQELKARLIS 2
            E+RS LGL GYYRRF+E FS IA+PLTKLT+K  +FQW+  CEK+FQELK RLI+
Sbjct: 887  EIRSFLGLAGYYRRFVEGFSSIASPLTKLTQKTGKFQWSEACEKSFQELKKRLIT 941


>gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]
          Length = 4543

 Score =  142 bits (359), Expect = 2e-32
 Identities = 65/113 (57%), Positives = 84/113 (74%)
 Frame = -2

Query: 346 HLRTVLQILREQKLFAKFSKCHFWERQVRFLGHVISSEGIAVDLXXXXXXXXXKQPTNAM 167
           HLRTVLQ L++++L+AKFSKC FW + V FLGH++S +GI VD           +PT+  
Sbjct: 609 HLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPT 668

Query: 166 EVRSLLGLVGYYRRFIEKFSLIAAPLTKLTRKNIQFQWNSECEKTFQELKARL 8
           E+RS LGL GYYRRF+E FS IA+PLTKLT+K ++ QW+  CEK+FQELK RL
Sbjct: 669 EIRSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKLQWSEACEKSFQELKKRL 721



 Score =  142 bits (359), Expect = 2e-32
 Identities = 65/113 (57%), Positives = 84/113 (74%)
 Frame = -2

Query: 346  HLRTVLQILREQKLFAKFSKCHFWERQVRFLGHVISSEGIAVDLXXXXXXXXXKQPTNAM 167
            HLRTVLQ L++++L+AKFSKC FW + V FLGH++S +GI VD           +PT+  
Sbjct: 2119 HLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPT 2178

Query: 166  EVRSLLGLVGYYRRFIEKFSLIAAPLTKLTRKNIQFQWNSECEKTFQELKARL 8
            E+RS LGL GYYRRF+E FS IA+PLTKLT+K ++ QW+  CEK+FQELK RL
Sbjct: 2179 EIRSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKLQWSEACEKSFQELKKRL 2231



 Score =  142 bits (359), Expect = 2e-32
 Identities = 65/113 (57%), Positives = 84/113 (74%)
 Frame = -2

Query: 346  HLRTVLQILREQKLFAKFSKCHFWERQVRFLGHVISSEGIAVDLXXXXXXXXXKQPTNAM 167
            HLRTVLQ L++++L+AKFSKC FW + V FLGH++S +GI VD           +PT+  
Sbjct: 3629 HLRTVLQTLKDKELYAKFSKCEFWLKSVAFLGHIVSGDGIKVDTWKIEAVQNWPRPTSPT 3688

Query: 166  EVRSLLGLVGYYRRFIEKFSLIAAPLTKLTRKNIQFQWNSECEKTFQELKARL 8
            E+RS LGL GYYRRF+E FS IA+PLTKLT+K ++ QW+  CEK+FQELK RL
Sbjct: 3689 EIRSFLGLAGYYRRFVEGFSTIASPLTKLTQKTVKLQWSEACEKSFQELKKRL 3741