BLASTX nr result

ID: Cimicifuga21_contig00034384 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034384
         (505 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517246.1| chromatin assembly factor I P60 subunit, put...   164   5e-39
ref|XP_002864911.1| hypothetical protein ARALYDRAFT_496675 [Arab...   157   9e-37
ref|NP_974992.1| transducin/WD40 domain-containing protein [Arab...   153   1e-35
ref|NP_974991.1| transducin/WD40 domain-containing protein [Arab...   153   1e-35
ref|XP_002274967.1| PREDICTED: chromatin assembly factor 1 subun...   152   2e-35

>ref|XP_002517246.1| chromatin assembly factor I P60 subunit, putative [Ricinus
           communis] gi|223543617|gb|EEF45146.1| chromatin assembly
           factor I P60 subunit, putative [Ricinus communis]
          Length = 455

 Score =  164 bits (416), Expect = 5e-39
 Identities = 88/167 (52%), Positives = 113/167 (67%)
 Frame = -1

Query: 505 PYRIVFAVATLNSLYIYDTESVPPIAIFAGLHYAAITDIAWSSDAKYLALSSQDGYCTLV 326
           PYR++FAVATLNSLYIYDTES PPIAI AGLHYAAITDIAWSS+A+YLA+SSQDGYCTLV
Sbjct: 307 PYRLIFAVATLNSLYIYDTESAPPIAILAGLHYAAITDIAWSSNAQYLAVSSQDGYCTLV 366

Query: 325 EFESDELGSPIPKPEIEGHIEEENLNVVTQKPEEMEITTPDVVKTVGRKTSNEETNASTN 146
           EFE +ELG PI   E +  I EEN +++ +KP+++ I           +T  ++++ +  
Sbjct: 367 EFEINELGLPITLGEHKNDIVEENKSLIVEKPDDIII-----------ETHTDDSSTAPE 415

Query: 145 SFSTPDSNKPATSTIATPVSNKPATGSVATSVTNKPAKRRITPMAID 5
           S  T          + +PV+         T ++ KPAKRRITPMAID
Sbjct: 416 SRETEVEKHEKKQVLPSPVN---------TPISTKPAKRRITPMAID 453


>ref|XP_002864911.1| hypothetical protein ARALYDRAFT_496675 [Arabidopsis lyrata subsp.
           lyrata] gi|297310746|gb|EFH41170.1| hypothetical protein
           ARALYDRAFT_496675 [Arabidopsis lyrata subsp. lyrata]
          Length = 489

 Score =  157 bits (397), Expect = 9e-37
 Identities = 92/180 (51%), Positives = 107/180 (59%), Gaps = 13/180 (7%)
 Frame = -1

Query: 505 PYRIVFAVATLNSLYIYDTESVPPIAIFAGLHYAAITDIAWSSDAKYLALSSQDGYCTLV 326
           PYR+VFA+ATLNS+YIYDTE V PIA+ AGLHYAAITDI WS +A YLALSSQDGYCTLV
Sbjct: 309 PYRLVFAIATLNSVYIYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLV 368

Query: 325 EFESDELGSPIPKPEIEGH---IEEENLNVVTQKPEEMEITTPDVVKTVGRKTSNEETNA 155
           EFE +ELG  IP     G      EE  + + +  E M  TTPDV K       NEE   
Sbjct: 369 EFEDNELGESIPISITVGRKPVDAEEKKHDLEKADELMTETTPDVSKKQAELQQNEENKQ 428

Query: 154 STNSFSTPDSN------KPATSTIATPV----SNKPATGSVATSVTNKPAKRRITPMAID 5
              S  T D        +     + T       N+P    V T V+NKPA++RITPMAID
Sbjct: 429 PLPSKITTDGEEKEHVMQKTDDEVMTETRHEEENQPLQSKVNTPVSNKPARKRITPMAID 488


>ref|NP_974992.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]
           gi|332010545|gb|AED97928.1| transducin/WD40
           domain-containing protein [Arabidopsis thaliana]
          Length = 428

 Score =  153 bits (387), Expect = 1e-35
 Identities = 90/181 (49%), Positives = 108/181 (59%), Gaps = 14/181 (7%)
 Frame = -1

Query: 505 PYRIVFAVATLNSLYIYDTESVPPIAIFAGLHYAAITDIAWSSDAKYLALSSQDGYCTLV 326
           PYR+VFA+ATLNS+YIYDTE V PIA+ AGLHYAAITDI WS +A YLALSSQDGYCTLV
Sbjct: 250 PYRLVFAIATLNSVYIYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLV 309

Query: 325 EFESDELGSPIP----KPEIEGHIEEENLNVVTQKPEEMEITTPDVVKTVGRKTSNEETN 158
           EFE  ELG  +     K  ++G   EE  + + +  E M  TTPD  K       NEE+ 
Sbjct: 310 EFEDKELGEAVSISVGKKPVDG---EEKKHDLEKGDELMTETTPDESKKQAELEQNEESK 366

Query: 157 ASTNSFSTPDSN------KPATSTIATPV----SNKPATGSVATSVTNKPAKRRITPMAI 8
               S  T D        +     + T       N+P    V T V+NKPA++RITPMAI
Sbjct: 367 QPLPSKITTDGKEKEHIMQKTDDEVMTETRHEEENQPLQSKVNTPVSNKPARKRITPMAI 426

Query: 7   D 5
           D
Sbjct: 427 D 427


>ref|NP_974991.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]
           gi|75337830|sp|Q9SXY1.1|FAS2_ARATH RecName:
           Full=Chromatin assembly factor 1 subunit FAS2;
           Short=CAF-1 subunit FAS2; AltName: Full=CAF-1 p60
           homolog; AltName: Full=Protein FASCIATA 2
           gi|4884488|dbj|BAA77766.1| FAS2 [Arabidopsis thaliana]
           gi|10178066|dbj|BAB11430.1| FAS2 [Arabidopsis thaliana]
           gi|332010547|gb|AED97930.1| transducin/WD40
           domain-containing protein [Arabidopsis thaliana]
          Length = 487

 Score =  153 bits (387), Expect = 1e-35
 Identities = 90/181 (49%), Positives = 108/181 (59%), Gaps = 14/181 (7%)
 Frame = -1

Query: 505 PYRIVFAVATLNSLYIYDTESVPPIAIFAGLHYAAITDIAWSSDAKYLALSSQDGYCTLV 326
           PYR+VFA+ATLNS+YIYDTE V PIA+ AGLHYAAITDI WS +A YLALSSQDGYCTLV
Sbjct: 309 PYRLVFAIATLNSVYIYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLV 368

Query: 325 EFESDELGSPIP----KPEIEGHIEEENLNVVTQKPEEMEITTPDVVKTVGRKTSNEETN 158
           EFE  ELG  +     K  ++G   EE  + + +  E M  TTPD  K       NEE+ 
Sbjct: 369 EFEDKELGEAVSISVGKKPVDG---EEKKHDLEKGDELMTETTPDESKKQAELEQNEESK 425

Query: 157 ASTNSFSTPDSN------KPATSTIATPV----SNKPATGSVATSVTNKPAKRRITPMAI 8
               S  T D        +     + T       N+P    V T V+NKPA++RITPMAI
Sbjct: 426 QPLPSKITTDGKEKEHIMQKTDDEVMTETRHEEENQPLQSKVNTPVSNKPARKRITPMAI 485

Query: 7   D 5
           D
Sbjct: 486 D 486


>ref|XP_002274967.1| PREDICTED: chromatin assembly factor 1 subunit B [Vitis vinifera]
           gi|296088566|emb|CBI37557.3| unnamed protein product
           [Vitis vinifera]
          Length = 456

 Score =  152 bits (385), Expect = 2e-35
 Identities = 85/167 (50%), Positives = 107/167 (64%)
 Frame = -1

Query: 505 PYRIVFAVATLNSLYIYDTESVPPIAIFAGLHYAAITDIAWSSDAKYLALSSQDGYCTLV 326
           PYR++FAVA+LNSLYIYDTES+PPIAI AGLHYAAITDIAWS D KYLA+SSQDGY TLV
Sbjct: 308 PYRLIFAVASLNSLYIYDTESIPPIAILAGLHYAAITDIAWSHDGKYLAISSQDGYSTLV 367

Query: 325 EFESDELGSPIPKPEIEGHIEEENLNVVTQKPEEMEITTPDVVKTVGRKTSNEETNASTN 146
           EFE+ ELGSP    E+E    +E  + V Q+P+ ME+     V TV   +   E   +  
Sbjct: 368 EFENGELGSPFLLSEVESVSGDEKKSPV-QQPKAMEVEETTQVVTVSVDSRKREVGRNDL 426

Query: 145 SFSTPDSNKPATSTIATPVSNKPATGSVATSVTNKPAKRRITPMAID 5
             ++P++   +TS                   T KPAKRRITP++I+
Sbjct: 427 KEASPNATSSSTS-------------------TPKPAKRRITPVSIE 454


Top