BLASTX nr result

ID: Cimicifuga21_contig00034356 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034356
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275536.2| PREDICTED: uncharacterized protein LOC100245...   111   5e-23
emb|CAN79396.1| hypothetical protein VITISV_010431 [Vitis vinifera]   111   5e-23
emb|CBI40035.3| unnamed protein product [Vitis vinifera]               87   1e-15
ref|NP_568451.7| uncharacterized protein [Arabidopsis thaliana] ...    76   2e-12
emb|CAC08248.1| VPS13-like protein [Arabidopsis thaliana]              76   2e-12

>ref|XP_002275536.2| PREDICTED: uncharacterized protein LOC100245550 [Vitis vinifera]
          Length = 4054

 Score =  111 bits (278), Expect = 5e-23
 Identities = 60/115 (52%), Positives = 75/115 (65%), Gaps = 5/115 (4%)
 Frame = -1

Query: 335  PMYVTVEKTMDAFSGARELCIFVPFLLYNCTGLPITVADLGHEMEG--CTMPPCYQLVEM 162
            P Y+TVEK MDAFSGARELCIFVPFLLYNCTG  + V+D  +EM+G  CT+P CY LVE 
Sbjct: 2944 PTYLTVEKVMDAFSGARELCIFVPFLLYNCTGFSLIVSDSANEMKGNDCTIPSCYTLVER 3003

Query: 161  DQHLDRKHSSILLSSKQDPYATRQSTDNIWNLSSKSH---SMENSNLHSRRGSSR 6
            + H+ RK    LLSS  D   T     ++ N SSK H   + +N +  S+R  S+
Sbjct: 3004 EVHVGRKDGLSLLSSDMDASTTTPVIASLRNSSSKEHIISTRKNVDTDSQRFQSK 3058


>emb|CAN79396.1| hypothetical protein VITISV_010431 [Vitis vinifera]
          Length = 2058

 Score =  111 bits (278), Expect = 5e-23
 Identities = 60/115 (52%), Positives = 75/115 (65%), Gaps = 5/115 (4%)
 Frame = -1

Query: 335  PMYVTVEKTMDAFSGARELCIFVPFLLYNCTGLPITVADLGHEMEG--CTMPPCYQLVEM 162
            P Y+TVEK MDAFSGARELCIFVPFLLYNCTG  + V+D  +EM+G  CT+P CY LVE 
Sbjct: 1835 PTYLTVEKVMDAFSGARELCIFVPFLLYNCTGFSLIVSDSANEMKGNDCTIPSCYTLVER 1894

Query: 161  DQHLDRKHSSILLSSKQDPYATRQSTDNIWNLSSKSH---SMENSNLHSRRGSSR 6
            + H+ RK    LLSS  D   T     ++ N SSK H   + +N +  S+R  S+
Sbjct: 1895 EVHVGRKDGLSLLSSDMDASTTTPVIASLRNSSSKEHIISTRKNVDTDSQRFQSK 1949


>emb|CBI40035.3| unnamed protein product [Vitis vinifera]
          Length = 2796

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 41/60 (68%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
 Frame = -1

Query: 335  PMYVTVEKTMDAFSGARELCIFVPFLLYNCTGLPITVADLGHEMEG--CTMPPCYQLVEM 162
            P Y+TVEK MDAFSGARELCIFVPFLLYNCTG  + V+D  +EM+G  CT+P CY L  M
Sbjct: 1716 PTYLTVEKVMDAFSGARELCIFVPFLLYNCTGFSLIVSDSANEMKGNDCTIPSCYTLACM 1775


>ref|NP_568451.7| uncharacterized protein [Arabidopsis thaliana]
            gi|332005969|gb|AED93352.1| uncharacterized protein
            [Arabidopsis thaliana]
          Length = 3464

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
 Frame = -1

Query: 332  MYVTVEKTMDAFSGARELCIFVPFLLYNCTGLPITVADLGHEMEG--CTMPPCYQLVEMD 159
            +YV+ EKTMDA  GARE+ IFVPFLLYNCTG P+ V+D  +E +G    +P CY L+E  
Sbjct: 2300 VYVSCEKTMDATCGAREVLIFVPFLLYNCTGTPLIVSDCTNETKGIYSVIPSCYNLIEQH 2359

Query: 158  QHLDRKHSSILLSSKQD 108
                RK    +L+S++D
Sbjct: 2360 FVQSRKVGLGILTSEKD 2376


>emb|CAC08248.1| VPS13-like protein [Arabidopsis thaliana]
          Length = 3306

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
 Frame = -1

Query: 332  MYVTVEKTMDAFSGARELCIFVPFLLYNCTGLPITVADLGHEMEG--CTMPPCYQLVEMD 159
            +YV+ EKTMDA  GARE+ IFVPFLLYNCTG P+ V+D  +E +G    +P CY L+E  
Sbjct: 2150 VYVSCEKTMDATCGAREVLIFVPFLLYNCTGTPLIVSDCTNETKGIYSVIPSCYNLIEQH 2209

Query: 158  QHLDRKHSSILLSSKQD 108
                RK    +L+S++D
Sbjct: 2210 FVQSRKVGLGILTSEKD 2226


Top