BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034339
         (267 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    69   5e-10
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               66   3e-09
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]          59   3e-07
emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]    59   5e-07
emb|CAN65855.1| hypothetical protein VITISV_013124 [Vitis vinifera]    59   5e-07

>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
 Frame = +3

Query: 93  SNF-SAAAPSTISSKNNNRPPCQICGRPNHSAINCYHRMDHAYEGRVPTKKLAAMVASS 266
           SN+ S    ST S   NNRP CQICG+  H+AI+C+HR D++Y+GR P + LAAMVA +
Sbjct: 254 SNYRSQQTRSTPSQLPNNRPVCQICGKSGHTAIDCFHRFDYSYQGRFPPQDLAAMVAET 312


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
 Frame = +3

Query: 30  RGKAPFFKNQSSSGQFTDKKISNFSAAAPSTISSKNNN-----RPPCQICGRPNHSAINC 194
           RG+  F  ++ SSG     + S+    AP T +S  N+     R  CQIC RP HSAI+C
Sbjct: 262 RGRGTFSHSRGSSGS----RRSSILGPAPGTTTSNGNSFFNTGRIQCQICSRPGHSAIDC 317

Query: 195 YHRMDHAYEGRVPTKKLAAMVA 260
           ++R++ +YEGRVP+ +L AM A
Sbjct: 318 FNRLNLSYEGRVPSSRLNAMTA 339


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
 Frame = +3

Query: 6   APKSKGVGRGKAPFFKNQSSSGQFT-DKKISNFSAAAPSTISSKNNNRPPCQICGRPNHS 182
           AP+     RG+    +N+   G  T  +  S   +A+PS+       RP CQICGR  H+
Sbjct: 236 APQYNSNSRGRGRSGQNRGRGGYSTRGRGFSQHQSASPSS-----GQRPVCQICGRIGHT 290

Query: 183 AINCYHRMDHAYEGRVPTKKLAAMVAS 263
           AI CY+R D+ Y+  VPT+  +A+  S
Sbjct: 291 AIKCYNRFDNNYQSEVPTQAFSALRVS 317


>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
          Length = 1131

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
 Frame = +3

Query: 21  GVGRGKAPFFKNQSSSGQFTDKKISN---FSAAAPSTISSKNNNRPPCQICGRPNHSAIN 191
           G GRG+  +  N  + G    +   N   +S+   + +S  +N +P CQ+CG+  H AIN
Sbjct: 209 GRGRGRGHYNNNGGNFGHGPGRGSFNNHSYSSRNFNNVSGGSNGKPQCQVCGKYGHIAIN 268

Query: 192 CYHRMDHAYEGRVPTKKLAAMVAS 263
           CYHR D  Y+  +    LAAMVA+
Sbjct: 269 CYHRFDQTYQPTM-NNHLAAMVAT 291


>emb|CAN65855.1| hypothetical protein VITISV_013124 [Vitis vinifera]
          Length = 456

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/78 (35%), Positives = 48/78 (61%)
 Frame = +3

Query: 33  GKAPFFKNQSSSGQFTDKKISNFSAAAPSTISSKNNNRPPCQICGRPNHSAINCYHRMDH 212
           G + F  +  SS  F  + + +  +++   +S  + +R PCQIC R NH A++CY+RM++
Sbjct: 249 GTSKFPGSIPSSSPFR-QPLPHLPSSSSPPVSHDSRSRSPCQICKRENHQALDCYNRMNY 307

Query: 213 AYEGRVPTKKLAAMVASS 266
           A++GR P  +L AMV  +
Sbjct: 308 AFQGRHPPIELVAMVVEA 325