BLASTX nr result
ID: Cimicifuga21_contig00034265
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00034265
(316 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containi... 109 1e-29
gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays] 97 1e-25
ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containi... 94 6e-25
ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group] g... 92 5e-24
gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japo... 92 5e-24
>ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Vitis vinifera]
Length = 1058
Score = 109 bits (273), Expect(2) = 1e-29
Identities = 50/79 (63%), Positives = 64/79 (81%)
Frame = +3
Query: 3 RDRGVTKKPGISWIQVKNKLLSFVNEDKTQDRIQEVYTTLKELHGRLREAGYFPDTNFVL 182
+D+G+TK+PGISWIQVKNKL FV D+T D+I+E+Y+ LKE +G R GY PDTNFVL
Sbjct: 916 KDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVL 975
Query: 183 HEVE*QQKEDALLYRSEKL 239
H+VE +QK++ LLY SEKL
Sbjct: 976 HDVEEEQKQNELLYHSEKL 994
Score = 45.1 bits (105), Expect(2) = 1e-29
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +2
Query: 236 TPHGTPIQIMKNLRICGYRHSFTKFLS 316
TP+G+PIQI+KNLRICG H+F KF+S
Sbjct: 1003 TPNGSPIQIIKNLRICGDCHTFMKFMS 1029
>gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 96.7 bits (239), Expect(2) = 1e-25
Identities = 43/79 (54%), Positives = 60/79 (75%)
Frame = +3
Query: 3 RDRGVTKKPGISWIQVKNKLLSFVNEDKTQDRIQEVYTTLKELHGRLREAGYFPDTNFVL 182
++RGV K PG SW+Q+KNK+ SFV D+ ++IQ +Y TL EL+ L+ GY PDT+FVL
Sbjct: 779 KERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVL 838
Query: 183 HEVE*QQKEDALLYRSEKL 239
H+++ +QKE +LLY SEKL
Sbjct: 839 HDIDEEQKESSLLYHSEKL 857
Score = 44.7 bits (104), Expect(2) = 1e-25
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 236 TPHGTPIQIMKNLRICGYRHSFTKFLS 316
TP G PIQIMKNLRICG H+F KF+S
Sbjct: 866 TPKGMPIQIMKNLRICGDCHTFIKFVS 892
>ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Brachypodium distachyon]
Length = 921
Score = 94.4 bits (233), Expect(2) = 6e-25
Identities = 42/79 (53%), Positives = 61/79 (77%)
Frame = +3
Query: 3 RDRGVTKKPGISWIQVKNKLLSFVNEDKTQDRIQEVYTTLKELHGRLREAGYFPDTNFVL 182
+ RGV+K+PG SW+Q++NK+ SFV DK ++I+E+ TL++L+ LR GY PDT FVL
Sbjct: 779 KQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVL 838
Query: 183 HEVE*QQKEDALLYRSEKL 239
H+++ +QKE +LLY SEKL
Sbjct: 839 HDIDEEQKESSLLYHSEKL 857
Score = 44.7 bits (104), Expect(2) = 6e-25
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 236 TPHGTPIQIMKNLRICGYRHSFTKFLS 316
TP G PIQIMKNLRICG H+F KF+S
Sbjct: 866 TPKGMPIQIMKNLRICGDCHTFIKFVS 892
>ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa Japonica
Group] gi|218190072|gb|EEC72499.1| hypothetical protein
OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa
Japonica Group]
Length = 922
Score = 92.4 bits (228), Expect(2) = 5e-24
Identities = 41/79 (51%), Positives = 59/79 (74%)
Frame = +3
Query: 3 RDRGVTKKPGISWIQVKNKLLSFVNEDKTQDRIQEVYTTLKELHGRLREAGYFPDTNFVL 182
+ +GV K+PG SW Q+K+K+ SFV DK ++I+E+ TL+EL+ L+ GY PDT FVL
Sbjct: 780 KQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVL 839
Query: 183 HEVE*QQKEDALLYRSEKL 239
H+++ +QKE +LLY SEKL
Sbjct: 840 HDIDEEQKESSLLYHSEKL 858
Score = 43.5 bits (101), Expect(2) = 5e-24
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +2
Query: 236 TPHGTPIQIMKNLRICGYRHSFTKFLS 316
TP G PIQI+KNLRICG H+F KF+S
Sbjct: 867 TPKGMPIQILKNLRICGDCHTFIKFVS 893
>gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 92.4 bits (228), Expect(2) = 5e-24
Identities = 41/79 (51%), Positives = 59/79 (74%)
Frame = +3
Query: 3 RDRGVTKKPGISWIQVKNKLLSFVNEDKTQDRIQEVYTTLKELHGRLREAGYFPDTNFVL 182
+ +GV K+PG SW Q+K+K+ SFV DK ++I+E+ TL+EL+ L+ GY PDT FVL
Sbjct: 780 KQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVL 839
Query: 183 HEVE*QQKEDALLYRSEKL 239
H+++ +QKE +LLY SEKL
Sbjct: 840 HDIDEEQKESSLLYHSEKL 858
Score = 43.5 bits (101), Expect(2) = 5e-24
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +2
Query: 236 TPHGTPIQIMKNLRICGYRHSFTKFLS 316
TP G PIQI+KNLRICG H+F KF+S
Sbjct: 867 TPKGMPIQILKNLRICGDCHTFIKFVS 893