BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034249
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containi...   183   1e-44
ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containi...   174   7e-42
ref|XP_002525469.1| pentatricopeptide repeat-containing protein,...   173   1e-41
ref|XP_002871645.1| pentatricopeptide repeat-containing protein ...   169   3e-40
ref|XP_002319140.1| predicted protein [Populus trichocarpa] gi|2...   168   4e-40

>ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  183 bits (464), Expect = 1e-44
 Identities = 88/122 (72%), Positives = 108/122 (88%)
 Frame = -1

Query: 392 GIARDTVSYSSMISCYSKVSNLHEVLKLFNQMKDLDISPDRKVYNAVIHALAKAKHVKEA 213
           GI RD VSYSS+ISCYSKV+NL++VLKLFNQMK+++I+PDRKVYNAV+HALAKA  VKEA
Sbjct: 285 GIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEMEIAPDRKVYNAVVHALAKASFVKEA 344

Query: 212 IELLKTMEDKGFIPNVVTYNSLIKPLCKARRVDDARVVFDEMLQKKLSPTIRTYHAFFGI 33
           + L+K ME KG  P+ VTYNSLIKPL +AR++++A+ VFDEMLQ+ LSPTIRTYHAFF I
Sbjct: 345 LNLMKAMEGKGIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAFFRI 404

Query: 32  LR 27
           L+
Sbjct: 405 LK 406



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 35/114 (30%), Positives = 64/114 (56%)
 Frame = -1

Query: 392 GIARDTVSYSSMISCYSKVSNLHEVLKLFNQMKDLDISPDRKVYNAVIHALAKAKHVKEA 213
           GIA D+V+Y+S+I   S+   ++E  ++F++M    +SP  + Y+A    L   K  +E 
Sbjct: 355 GIAPDSVTYNSLIKPLSRARKINEAKEVFDEMLQRGLSPTIRTYHAFFRIL---KSGEEV 411

Query: 212 IELLKTMEDKGFIPNVVTYNSLIKPLCKARRVDDARVVFDEMLQKKLSPTIRTY 51
             LL+ M++ G  P+  TY  LI+  C+ R++D+   ++ EM +  + P   +Y
Sbjct: 412 FMLLEKMKETGCHPDKDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGPDRSSY 465


>ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
           gi|449477985|ref|XP_004155184.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  174 bits (441), Expect = 7e-42
 Identities = 84/122 (68%), Positives = 101/122 (82%)
 Frame = -1

Query: 392 GIARDTVSYSSMISCYSKVSNLHEVLKLFNQMKDLDISPDRKVYNAVIHALAKAKHVKEA 213
           GI+ D VSY+S ISCYSKV NLH+VL+LF  MK + I PDRKVYNAVIH+LAK + +KEA
Sbjct: 214 GISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNAVIHSLAKGRCLKEA 273

Query: 212 IELLKTMEDKGFIPNVVTYNSLIKPLCKARRVDDARVVFDEMLQKKLSPTIRTYHAFFGI 33
            +L+KTME+KG I NVVTYNS+IKPLCKARR D+AR VF+E+LQ+ L PTI+TYHAF   
Sbjct: 274 ADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTIQTYHAFLRF 333

Query: 32  LR 27
           LR
Sbjct: 334 LR 335



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 33/114 (28%), Positives = 56/114 (49%)
 Frame = -1

Query: 392 GIARDTVSYSSMISCYSKVSNLHEVLKLFNQMKDLDISPDRKVYNAVIHALAKAKHVKEA 213
           GI  + V+Y+S+I    K     E   +F ++    + P  + Y+A +  L   +  +E 
Sbjct: 284 GIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTIQTYHAFLRFL---RTEEEI 340

Query: 212 IELLKTMEDKGFIPNVVTYNSLIKPLCKARRVDDARVVFDEMLQKKLSPTIRTY 51
            ELLK M   G  P   TY  LI+  C+ R++D+   ++ EM +  +SP   +Y
Sbjct: 341 FELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSY 394


>ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535282|gb|EEF36959.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 581

 Score =  173 bits (439), Expect = 1e-41
 Identities = 82/118 (69%), Positives = 99/118 (83%)
 Frame = -1

Query: 380 DTVSYSSMISCYSKVSNLHEVLKLFNQMKDLDISPDRKVYNAVIHALAKAKHVKEAIELL 201
           D VSY+S+ISCYSK  NL++V KL+NQMK++ I PDRK+YN+VI ALAK +HV EAI L+
Sbjct: 303 DVVSYASIISCYSKAGNLYKVFKLYNQMKEVGIEPDRKIYNSVIFALAKGRHVSEAINLM 362

Query: 200 KTMEDKGFIPNVVTYNSLIKPLCKARRVDDARVVFDEMLQKKLSPTIRTYHAFFGILR 27
           KTME+KG  PN VTYNSLIKPLC+AR++D+AR +FDEMLQ   SPTIRTYHAFF  LR
Sbjct: 363 KTMEEKGIAPNTVTYNSLIKPLCRARKIDEARGLFDEMLQHGHSPTIRTYHAFFRSLR 420


>ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297317482|gb|EFH47904.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 524

 Score =  169 bits (427), Expect = 3e-40
 Identities = 87/123 (70%), Positives = 100/123 (81%), Gaps = 1/123 (0%)
 Frame = -1

Query: 392 GIARDTVSYSSMISCYSKVSNLHEVLKLFNQMKDLDISPDRKVYNAVIHALAKAKHVKEA 213
           G+  D VSYSSMISCYSK  +L++VLKLF++MK   I PDRKVYNAVIHALAKA  V EA
Sbjct: 246 GVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKESIEPDRKVYNAVIHALAKASFVSEA 305

Query: 212 IELLKTM-EDKGFIPNVVTYNSLIKPLCKARRVDDARVVFDEMLQKKLSPTIRTYHAFFG 36
             L+KTM E+KG  PNVVTYNSLIKPLCKAR+ ++A+ VFDEML+K L PTIRTYHAF  
Sbjct: 306 RNLMKTMEEEKGMEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR 365

Query: 35  ILR 27
           ILR
Sbjct: 366 ILR 368


>ref|XP_002319140.1| predicted protein [Populus trichocarpa] gi|222857516|gb|EEE95063.1|
           predicted protein [Populus trichocarpa]
          Length = 296

 Score =  168 bits (426), Expect = 4e-40
 Identities = 80/122 (65%), Positives = 100/122 (81%)
 Frame = -1

Query: 392 GIARDTVSYSSMISCYSKVSNLHEVLKLFNQMKDLDISPDRKVYNAVIHALAKAKHVKEA 213
           GI  D VSY+SM+SCYSK  +L+ VL+L+ QMK + I PDRKVYNAVIHALAK + V EA
Sbjct: 5   GIRFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGIEPDRKVYNAVIHALAKGRLVNEA 64

Query: 212 IELLKTMEDKGFIPNVVTYNSLIKPLCKARRVDDARVVFDEMLQKKLSPTIRTYHAFFGI 33
             L+KTME+KG  PN+VTYNSLIKPLC+AR+V++A+  FD+ML++ +SPTIRTYHAF  I
Sbjct: 65  FNLMKTMEEKGVAPNIVTYNSLIKPLCRARKVEEAKGAFDDMLKRCISPTIRTYHAFLRI 124

Query: 32  LR 27
           LR
Sbjct: 125 LR 126