BLASTX nr result

ID: Cimicifuga21_contig00034224 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034224
         (268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_188669.1| uncharacterized protein [Arabidopsis thaliana] ...    57   2e-06
ref|XP_002885368.1| hypothetical protein ARALYDRAFT_898447 [Arab...    56   3e-06

>ref|NP_188669.1| uncharacterized protein [Arabidopsis thaliana]
           gi|9294551|dbj|BAB02814.1| unnamed protein product
           [Arabidopsis thaliana] gi|44681326|gb|AAS47603.1|
           At3g20340 [Arabidopsis thaliana]
           gi|45773836|gb|AAS76722.1| At3g20340 [Arabidopsis
           thaliana] gi|332642845|gb|AEE76366.1| uncharacterized
           protein [Arabidopsis thaliana]
          Length = 115

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
 Frame = +1

Query: 19  RHESSNIWAGEDWSCALSEELSTKNDLKSKAKISPDGAREPVIEAKENATS--STKVKIR 192
           RHES   WAGEDW   ++E+   + D    +K + DG  +PVI  +++ +S  S ++KIR
Sbjct: 6   RHESEMHWAGEDWDEFITED---EEDHHYSSKTTRDG--KPVIVTRDSKSSVPSHEIKIR 60

Query: 193 IPKKQLEELFKRVDVESLSMEQE 261
           + KKQL +L  +V+V  L+ +Q+
Sbjct: 61  LTKKQLHDLLSKVNVHDLTFQQQ 83


>ref|XP_002885368.1| hypothetical protein ARALYDRAFT_898447 [Arabidopsis lyrata subsp.
           lyrata] gi|297331208|gb|EFH61627.1| hypothetical protein
           ARALYDRAFT_898447 [Arabidopsis lyrata subsp. lyrata]
          Length = 116

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/81 (35%), Positives = 46/81 (56%)
 Frame = +1

Query: 19  RHESSNIWAGEDWSCALSEELSTKNDLKSKAKISPDGAREPVIEAKENATSSTKVKIRIP 198
           RHES   WAGEDW   ++E+   + D    +K + DG    V    +++  S ++KIR+ 
Sbjct: 6   RHESEMHWAGEDWDEFITED---EEDHHYSSKTTRDGKTVVVTRDSKSSVPSHEIKIRLT 62

Query: 199 KKQLEELFKRVDVESLSMEQE 261
           KKQL +L  +V+V  L+  Q+
Sbjct: 63  KKQLHDLLSKVNVHDLTFHQQ 83


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