BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034158
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...    94   1e-17
ref|XP_003608278.1| Pentatricopeptide repeat-containing protein ...    94   1e-17
ref|XP_002328265.1| predicted protein [Populus trichocarpa] gi|2...    94   2e-17
ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16

>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
           protein product [Vitis vinifera]
          Length = 878

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/77 (61%), Positives = 61/77 (79%)
 Frame = -1

Query: 288 RSYNLLIWGLGSKGKIEEIYQLMSEMEEKGISPDIFTYNNLLRSLCEGGNTRDATYRLDK 109
           ++YN LI GLGSK +I EIY L+ +M+EKGI+P+I TYNN++  LCEGG  +DAT  LD+
Sbjct: 599 QTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDE 658

Query: 108 MLQSHIVPDVSSFRLLI 58
           MLQ  I P++SSFRLLI
Sbjct: 659 MLQKGISPNISSFRLLI 675



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/76 (35%), Positives = 44/76 (57%)
 Frame = -1

Query: 285 SYNLLIWGLGSKGKIEEIYQLMSEMEEKGISPDIFTYNNLLRSLCEGGNTRDATYRLDKM 106
           SYN+ + GL   GK+ E    + EM +KGI P+I+++N ++  LC+ G   DA   +  M
Sbjct: 332 SYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLM 391

Query: 105 LQSHIVPDVSSFRLLI 58
           + S I PD  ++  L+
Sbjct: 392 ISSGIGPDTVTYSTLL 407


>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 45/77 (58%), Positives = 58/77 (75%)
 Frame = -1

Query: 288 RSYNLLIWGLGSKGKIEEIYQLMSEMEEKGISPDIFTYNNLLRSLCEGGNTRDATYRLDK 109
           ++YN LI GLGSK +I E+Y L+ EM EKG+SPD+ TYN++L  LCEGG   DA   LD+
Sbjct: 595 QTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDE 654

Query: 108 MLQSHIVPDVSSFRLLI 58
           MLQ  I P++SSFR+LI
Sbjct: 655 MLQKGISPNISSFRILI 671



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/76 (35%), Positives = 46/76 (60%)
 Frame = -1

Query: 285 SYNLLIWGLGSKGKIEEIYQLMSEMEEKGISPDIFTYNNLLRSLCEGGNTRDATYRLDKM 106
           SYN+ + GL   GK+ E + ++ EM   GI PDI++YN ++  LC+ G   DA   +  M
Sbjct: 328 SYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLM 387

Query: 105 LQSHIVPDVSSFRLLI 58
           +++ I+PD  ++  L+
Sbjct: 388 IRNGILPDTVTYSTLL 403


>ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359684|gb|ABD32353.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355509333|gb|AES90475.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 870

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 47/78 (60%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
 Frame = -1

Query: 288 RSYNLLIWGLGSKGKIEEIYQLMSEMEEKGISPDIFTYNNLLRSLCEGGNTRDATYRLDK 109
           ++YN LI GLGSKG+I E+Y LM EM E+GI PDI TYNN++  LCEGG T+DAT  L +
Sbjct: 596 QTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHE 655

Query: 108 MLQSHIV-PDVSSFRLLI 58
           ML   +V P+VSSF++LI
Sbjct: 656 MLDKGVVSPNVSSFKILI 673


>ref|XP_002328265.1| predicted protein [Populus trichocarpa] gi|222837780|gb|EEE76145.1|
           predicted protein [Populus trichocarpa]
          Length = 742

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 45/77 (58%), Positives = 58/77 (75%)
 Frame = -1

Query: 288 RSYNLLIWGLGSKGKIEEIYQLMSEMEEKGISPDIFTYNNLLRSLCEGGNTRDATYRLDK 109
           ++YN LI GLGSK +I EIY L+ EM E+G+SPD+  YNN+L SLCEGG  +DA   LD+
Sbjct: 504 QTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDE 563

Query: 108 MLQSHIVPDVSSFRLLI 58
           MLQ  I P++SSF +LI
Sbjct: 564 MLQKGISPNISSFSILI 580


>ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 43/77 (55%), Positives = 59/77 (76%)
 Frame = -1

Query: 288 RSYNLLIWGLGSKGKIEEIYQLMSEMEEKGISPDIFTYNNLLRSLCEGGNTRDATYRLDK 109
           R+YN LI GLGS+ +I EIY LM EM+E+GI P+++TYNN++  L EGG  +DAT  LD+
Sbjct: 600 RTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDE 659

Query: 108 MLQSHIVPDVSSFRLLI 58
           MLQ  I P++ +FR+LI
Sbjct: 660 MLQKGISPNIYTFRILI 676



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/77 (37%), Positives = 47/77 (61%)
 Frame = -1

Query: 288 RSYNLLIWGLGSKGKIEEIYQLMSEMEEKGISPDIFTYNNLLRSLCEGGNTRDATYRLDK 109
           RSYN+ + GL   GK+ E + +++EM EK I P++++YN L+  LC+ G   DA   L  
Sbjct: 332 RSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGL 391

Query: 108 MLQSHIVPDVSSFRLLI 58
           M +S + PD  ++  L+
Sbjct: 392 MRESGVAPDTVTYSTLL 408