BLASTX nr result
ID: Cimicifuga21_contig00034048
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00034048
(309 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI34375.3| unnamed protein product [Vitis vinifera] 127 1e-27
ref|XP_002299515.1| predicted protein [Populus trichocarpa] gi|2... 115 5e-24
ref|XP_002867196.1| pentatricopeptide repeat-containing protein ... 95 5e-18
ref|NP_195043.1| pentatricopeptide repeat-containing protein [Ar... 95 5e-18
ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 94 1e-17
>emb|CBI34375.3| unnamed protein product [Vitis vinifera]
Length = 814
Score = 127 bits (318), Expect = 1e-27
Identities = 57/91 (62%), Positives = 73/91 (80%)
Frame = +2
Query: 20 VDSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMA 199
VD IT+S++LKACG+LT +E GR IHS+ALK G+SQDNFV +A++DVYCKCG++D+
Sbjct: 517 VDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKT 576
Query: 200 FNELSVDNTAAWNAMIMGYAQHGYVQEVFEL 292
F +S +N AWNAM+MGYAQHG EVFEL
Sbjct: 577 FMNVSKNNLVAWNAMVMGYAQHGCYHEVFEL 607
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = +2
Query: 23 DSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMAF 202
D ++S L+K CG L EQ + H + LK G+ + FV + L+D Y K G +D F
Sbjct: 120 DEFSLSSLVKGCGVL---EQNEVAHGVCLKMGLL-NGFVVSGLLDGYAKLGDVDSAEKCF 175
Query: 203 NELSVDNTAAWNAMIMGYAQHGYVQEVFELSVD 301
E + ++ W AM+ G+ +G ++ E+ V+
Sbjct: 176 KEFYIADSVVWTAMVCGFVWNGEFEKGREVFVE 208
>ref|XP_002299515.1| predicted protein [Populus trichocarpa] gi|222846773|gb|EEE84320.1|
predicted protein [Populus trichocarpa]
Length = 568
Score = 115 bits (287), Expect = 5e-24
Identities = 51/91 (56%), Positives = 68/91 (74%)
Frame = +2
Query: 20 VDSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMA 199
VDS T S++LKAC ++T M+ GR +HSL LK G QD+FV ++++D+YCKCGSI A
Sbjct: 272 VDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKA 331
Query: 200 FNELSVDNTAAWNAMIMGYAQHGYVQEVFEL 292
F S+++ AAWNAM+MGYA HG QEVF+L
Sbjct: 332 FRSSSMNSLAAWNAMMMGYAHHGCYQEVFDL 362
>ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297313032|gb|EFH43455.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 997
Score = 95.1 bits (235), Expect = 5e-18
Identities = 46/90 (51%), Positives = 59/90 (65%)
Frame = +2
Query: 23 DSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMAF 202
D T++ L KA LTA+EQGR IH+ ALK + D FV T+LVD+Y KCGSIDD F
Sbjct: 624 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLF 683
Query: 203 NELSVDNTAAWNAMIMGYAQHGYVQEVFEL 292
+ + N AWNAM++G AQHG +E +L
Sbjct: 684 KRIEMMNITAWNAMLVGLAQHGEGKEALQL 713
Score = 69.3 bits (168), Expect = 3e-10
Identities = 29/82 (35%), Positives = 50/82 (60%)
Frame = +2
Query: 23 DSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMAF 202
D T++ +LK CG L A+ QG+ +H+ A+K G D +V + ++D+Y KCG + + AF
Sbjct: 523 DDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAF 582
Query: 203 NELSVDNTAAWNAMIMGYAQHG 268
+ + V + AW +I G ++G
Sbjct: 583 DSIPVPDDVAWTTLISGCIENG 604
Score = 63.5 bits (153), Expect = 2e-08
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Frame = +2
Query: 29 ITVSVLLKAC---GSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMA 199
+T+S +LK C G + A E H A K G+ D+FV ALV++Y K G + +GR+
Sbjct: 153 MTLSPMLKLCLHSGYVCASES---FHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVL 209
Query: 200 FNELSVDNTAAWNAMIMGYAQHGYVQEVFELS 295
F E+ + WN M+ Y + G+ +E +LS
Sbjct: 210 FEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 241
>ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g33170 gi|4455331|emb|CAB36791.1| putative protein
[Arabidopsis thaliana] gi|7270265|emb|CAB80034.1|
putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 95.1 bits (235), Expect = 5e-18
Identities = 46/90 (51%), Positives = 59/90 (65%)
Frame = +2
Query: 23 DSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMAF 202
D T++ L KA LTA+EQGR IH+ ALK + D FV T+LVD+Y KCGSIDD F
Sbjct: 617 DEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLF 676
Query: 203 NELSVDNTAAWNAMIMGYAQHGYVQEVFEL 292
+ + N AWNAM++G AQHG +E +L
Sbjct: 677 KRIEMMNITAWNAMLVGLAQHGEGKETLQL 706
Score = 70.9 bits (172), Expect = 1e-10
Identities = 30/90 (33%), Positives = 52/90 (57%)
Frame = +2
Query: 23 DSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMAF 202
D T++ + K CG L A+ QG+ +H+ A+K G D +V + ++D+Y KCG + + AF
Sbjct: 516 DDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAF 575
Query: 203 NELSVDNTAAWNAMIMGYAQHGYVQEVFEL 292
+ + V + AW MI G ++G + F +
Sbjct: 576 DSIPVPDDVAWTTMISGCIENGEEERAFHV 605
Score = 62.0 bits (149), Expect = 5e-08
Identities = 29/89 (32%), Positives = 47/89 (52%)
Frame = +2
Query: 29 ITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMAFNE 208
+T+S +LK C + H A K G+ D FV ALV++Y K G + +G++ F E
Sbjct: 146 MTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEE 205
Query: 209 LSVDNTAAWNAMIMGYAQHGYVQEVFELS 295
+ + WN M+ Y + G+ +E +LS
Sbjct: 206 MPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234
>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 94.0 bits (232), Expect = 1e-17
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = +2
Query: 23 DSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMAF 202
D T + L+KA LTA+EQG+ IH+ +K S D+FV T+LVD+YCKCGS+ D F
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258
Query: 203 NELSVDNTAAWNAMIMGYAQHGYVQEVFEL 292
++ V WNAM++G AQHG+V E L
Sbjct: 1259 RKMDVRKVVFWNAMLLGLAQHGHVDEALNL 1288
Score = 68.2 bits (165), Expect = 7e-10
Identities = 30/83 (36%), Positives = 51/83 (61%)
Frame = +2
Query: 20 VDSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGRMA 199
+D IT++ +KA G L ++QG+ I + A+K G + D +V + ++D+Y KCG + +
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156
Query: 200 FNELSVDNTAAWNAMIMGYAQHG 268
F E+S + AW MI GY ++G
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENG 1179
Score = 63.2 bits (152), Expect = 2e-08
Identities = 28/93 (30%), Positives = 50/93 (53%)
Frame = +2
Query: 2 RDFNDTVDSITVSVLLKACGSLTAMEQGRIIHSLALKCGISQDNFVRTALVDVYCKCGSI 181
R+F ++ +T++ LLK C ++ +H A+K G D FV ALV++YCK G +
Sbjct: 709 REFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLV 768
Query: 182 DDGRMAFNELSVDNTAAWNAMIMGYAQHGYVQE 280
R+ F+++ + WN M+ Y ++ + E
Sbjct: 769 GQARLLFDKMPERDAVLWNVMLKAYVENSFQDE 801
Score = 60.1 bits (144), Expect = 2e-07
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Frame = +2
Query: 23 DSITVSVLLKACGSLTAMEQ---GRIIHSLALKCGISQDNFVRTALVDVYCKCGSIDDGR 193
D T++ +L+AC + E G +H A+KCGI D+FV TAL+D+Y K G +D+
Sbjct: 994 DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053
Query: 194 MAFNELSVDNTAAWNAMIMGYAQHGYVQEVFE 289
+ + A+WNA++ GY + ++ E
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085