BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00034006
         (513 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    85   5e-15
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...    84   2e-14
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    79   3e-13
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    78   9e-13
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    67   2e-09

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 57/157 (36%), Positives = 80/157 (50%), Gaps = 13/157 (8%)
 Frame = -1

Query: 432 MKRAKGIAASLRLAESFLLSRTSPARFLHFQVTRYSHLPPFSSSLSKQRVFNYGFLNTHQ 253
           M RA+ I  SLRL+   L +R S  R    QVT +     F   LS++  +   ++N H+
Sbjct: 1   MNRARTILVSLRLSNFLLSTRISTTRPFLTQVTHF-----FPCFLSREHSYTSDYVNIHK 55

Query: 252 NLYFTI-------------WVTERFLKFIRKLDLTLSDETVSHVLKNLEGNPQKALAFFN 112
            LY +              W  E   +      L L+ ETV +VLK L+ +P KA  FFN
Sbjct: 56  KLYSSSKPSSLVELLSVNDWSPELETQLENSSPL-LTHETVIYVLKKLDKDPHKAWDFFN 114

Query: 111 WLSENPCFKPSPVVYNLMLRILGTKDSINEFWGLIKK 1
           W+ +   FKPS  +Y+LMLRIL  KDS+  FW  ++K
Sbjct: 115 WVCDRNGFKPSSPLYSLMLRILVKKDSMKNFWITLRK 151



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/71 (38%), Positives = 42/71 (59%)
 Frame = -1

Query: 213 KFIRKLDLTLSDETVSHVLKNLEGNPQKALAFFNWLSENPCFKPSPVVYNLMLRILGTKD 34
           K +  + + L+D  V  VLK L   P KAL FFNW  +   ++ + + YN + R+LG  D
Sbjct: 218 KELEGMGILLTDNFVIRVLKELRNYPLKALQFFNWAGKCERYECNTITYNAIARVLGRDD 277

Query: 33  SINEFWGLIKK 1
           SI EFW ++++
Sbjct: 278 SIGEFWSVVEE 288


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
 Frame = -1

Query: 432 MKRAKGIAASLRLAESFLLSRTSPARFLHFQVTRYSHLPPFSSSLSKQRVFNYGFLNTHQ 253
           M R + I  +LR  ES L SR +  R L     + +H    + S       ++   N HQ
Sbjct: 1   MNRLRAIVVNLRFLESPLASRVTATRSLLLTRNQVTHFSLCTPSPLLDNSHHFLLPNIHQ 60

Query: 252 NLYFT--------IWVTERFLKFIR----KLDLTLSDETVSHVLKNLEGNPQKALAFFNW 109
           NLYF+        + +T  + K +     K   +++ ETV +VLK +E NP+KA  FFNW
Sbjct: 61  NLYFSSKPNSIVELVLTSDWSKGLEQELEKCYPSMTHETVVYVLKRMEANPEKAWCFFNW 120

Query: 108 LSENPCFKPSPVVYNLMLRILGTKDSINEFW 16
           +S    ++PS  +Y L+LR+L T+++I  FW
Sbjct: 121 VSAKEWYRPSSSLYGLILRVLATEETIKLFW 151



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 27/69 (39%), Positives = 43/69 (62%)
 Frame = -1

Query: 207 IRKLDLTLSDETVSHVLKNLEGNPQKALAFFNWLSENPCFKPSPVVYNLMLRILGTKDSI 28
           + KL++ +SD  V+ VLK L   P KA  FFNW+ +   ++   V YN + R+L + DSI
Sbjct: 225 LAKLEIRMSDNFVTRVLKELRNCPLKAYEFFNWVGKQSGYEHDTVTYNAIARVLASTDSI 284

Query: 27  NEFWGLIKK 1
            +FW +I++
Sbjct: 285 EKFWSVIEE 293


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
 Frame = -1

Query: 432 MKRAKGIAASLRLAESFLLSRTSPARFLHFQVTRYSHLPPFSSSLSKQRVFNYGFLNTHQ 253
           M R K IA+SLR  ES L +R    R      + ++ LP F  S       +  F  TH 
Sbjct: 1   MNRVKAIASSLRTLESSLATRVLVTRNQVTHFSLHNPLPLFDRS------HHLRFPITHH 54

Query: 252 NLYFTIW-----VTERFLK--FIRKLDLTLSD-------ETVSHVLKNLEGNPQKALAFF 115
            LYF+       + E  L   + + L+L L +       ETV +V+K L+ NP+KA  FF
Sbjct: 55  KLYFSTKPKPNSIVELLLTNDWSQALELKLENRFPSMPHETVLYVIKRLDKNPEKASCFF 114

Query: 114 NWLSENPCFKPSPVVYNLMLRILGTKDSINEFW 16
           NW+ +   F+PS  VY+L++RIL  KD++ +FW
Sbjct: 115 NWVCKKVWFRPSCSVYSLIVRILAAKDTMKQFW 147



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/69 (39%), Positives = 41/69 (59%)
 Frame = -1

Query: 207 IRKLDLTLSDETVSHVLKNLEGNPQKALAFFNWLSENPCFKPSPVVYNLMLRILGTKDSI 28
           + KL++ LSD  V  VLK L   P KA  FF+W+ +   ++   V YN + R+L   +SI
Sbjct: 221 LAKLEIQLSDNFVIRVLKELRKTPLKAYKFFHWVGKQSGYEHDTVTYNAVARVLPRAESI 280

Query: 27  NEFWGLIKK 1
            EFW +I++
Sbjct: 281 EEFWSVIEE 289


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
 Frame = -1

Query: 432 MKRAKGIAASLRLAESFLLSRTSPARFLHFQVTRYSHLPPFSSSLSKQRVFNYG-----F 268
           M RAK I  S+R   SF  ++   A  L +QVT+ S   P  S+ S    F Y      F
Sbjct: 1   MNRAKAILFSIRFTNSFRSTQFRRASSLCYQVTQSSRFSPSFSNQSYTSAFPYILYGKLF 60

Query: 267 LNTHQNLYFTIWV----TERFLKFIRKLDLTLSDETVSHVLKNLEGNPQKALAFFNWLSE 100
            ++  N    + +    ++     + K    L+ ETV +VLK L+ +PQ+   FFNW++E
Sbjct: 61  FSSKPNSIVELVLENDWSDELESELEKSSSVLTHETVIYVLKKLDKDPQRTWNFFNWVTE 120

Query: 99  NPCFKPSPVVYNLMLRILGTKDSINEFWGLIKK 1
              F+PS  +Y+L+LR L   +S+ +FW  I+K
Sbjct: 121 KNGFRPSSAMYSLILRSLVHGESMKQFWVTIRK 153



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 33/80 (41%), Positives = 51/80 (63%)
 Frame = -1

Query: 240 TIWVTERFLKFIRKLDLTLSDETVSHVLKNLEGNPQKALAFFNWLSENPCFKPSPVVYNL 61
           ++W +E   K + +L  + SD  V HVL+ L G P KAL FF W+ E P ++ S + YN+
Sbjct: 212 SVWSSE-VEKKLGELKNSFSDNFVLHVLRELRGYPLKALRFFQWVGECPGYEHSSITYNV 270

Query: 60  MLRILGTKDSINEFWGLIKK 1
           + R+LG  DSI EFW ++++
Sbjct: 271 IARVLGRDDSIGEFWSMVEE 290


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
 Frame = -1

Query: 432 MKRAKGIAASLRLAESFLLSRTSPARFLHFQVTRYSHLPPFSSSLSKQRVFNYGFLNTHQ 253
           M R   I  SLRLA SF  +R+      + QVTR+S     SS +S Q + ++  +N H 
Sbjct: 1   MTRRNAIFTSLRLANSFFSTRSR-----YPQVTRFSP----SSYVSHQSLVSHFTIN-HP 50

Query: 252 NLYFTI-------------WVTERFLKFIRKLDLTLSDETVSHVLKNLEGNPQKALAFFN 112
            L+F+              W +E     +  L+ TL+ ETV +VLK L+  PQKA  FFN
Sbjct: 51  VLFFSSNPQSLLQLVSTNDW-SEMLETELETLNPTLTHETVVYVLKRLDKQPQKASEFFN 109

Query: 111 WLSENPCFKPSPVVYNLMLRILGTKDSINEFW 16
           W S       S  +Y+++LRI    +S+  FW
Sbjct: 110 WASGKNGSTQSSSIYSMLLRIFVQNESMKLFW 141



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 30/69 (43%), Positives = 44/69 (63%)
 Frame = -1

Query: 207 IRKLDLTLSDETVSHVLKNLEGNPQKALAFFNWLSENPCFKPSPVVYNLMLRILGTKDSI 28
           + +L + LSD  V  VLK L  +P KAL+FF+W+   P +  + V YN + R+LG  DSI
Sbjct: 215 LEELGIALSDNFVIRVLKELRNSPLKALSFFHWVGCRPDYDHNTVSYNAIARVLGRDDSI 274

Query: 27  NEFWGLIKK 1
             FWG+I++
Sbjct: 275 EAFWGVIEE 283