BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033957
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containi...    89   6e-25
emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]    76   5e-21
ref|XP_003628741.1| Pentatricopeptide repeat-containing protein ...    82   1e-19
ref|XP_002533966.1| pentatricopeptide repeat-containing protein,...    76   3e-18
ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containi...    72   1e-15

>ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score = 89.0 bits (219), Expect(2) = 6e-25
 Identities = 39/81 (48%), Positives = 62/81 (76%)
 Frame = -3

Query: 340 RVIEERFISLLKNTCRSLKQIKVIQSKIITYGLEQNEYIAPKLVSVCAESKKMVYAQSVF 161
           R++EERFISLL++ C++ KQ+  IQ++II  G + NEYI PKLV++CA  K+M YA+ +F
Sbjct: 35  RLLEERFISLLQS-CKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLF 93

Query: 160 TRFFNPNVLVWNAMLKGYSDN 98
            +  +PN+ +WN+M +GY+ +
Sbjct: 94  DQIPDPNIALWNSMFRGYAQS 114



 Score = 50.1 bits (118), Expect(2) = 6e-25
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -1

Query: 90  RETLVMFNLMKSRDVRPNCFTFPVVLKSCG 1
           RE + +F  MK  D+RPNCFTFPVVLKSCG
Sbjct: 118 REVVFLFFQMKGMDIRPNCFTFPVVLKSCG 147


>emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score = 75.9 bits (185), Expect(2) = 5e-21
 Identities = 30/68 (44%), Positives = 50/68 (73%)
 Frame = -3

Query: 301 TCRSLKQIKVIQSKIITYGLEQNEYIAPKLVSVCAESKKMVYAQSVFTRFFNPNVLVWNA 122
           +C++ KQ+  IQ++II  G + NEYI PKLV++CA  K+M YA+ +F +  +PN+ +WN+
Sbjct: 110 SCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNS 169

Query: 121 MLKGYSDN 98
           M +GY+ +
Sbjct: 170 MFRGYAQS 177



 Score = 50.1 bits (118), Expect(2) = 5e-21
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -1

Query: 90  RETLVMFNLMKSRDVRPNCFTFPVVLKSCG 1
           RE + +F  MK  D+RPNCFTFPVVLKSCG
Sbjct: 181 REVVFLFFQMKGMDIRPNCFTFPVVLKSCG 210


>ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355522763|gb|AET03217.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 758

 Score = 82.0 bits (201), Expect(2) = 1e-19
 Identities = 32/82 (39%), Positives = 60/82 (73%)
 Frame = -3

Query: 340 RVIEERFISLLKNTCRSLKQIKVIQSKIITYGLEQNEYIAPKLVSVCAESKKMVYAQSVF 161
           R++EE+FI+LL++ C++ +++  IQ++I+T+GLE N+++AP  ++ C+  K++ +A+ +F
Sbjct: 9   RIVEEKFITLLRS-CKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLF 67

Query: 160 TRFFNPNVLVWNAMLKGYSDNG 95
            +   PN   WNAM +GY  NG
Sbjct: 68  DKIPQPNTATWNAMFRGYLQNG 89



 Score = 39.3 bits (90), Expect(2) = 1e-19
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = -1

Query: 90  RETLVMFNLMKSRDVRPNCFTFPVVLKSCG 1
           R+T+V+F  +      PNCFTFP+++KSCG
Sbjct: 92  RDTVVLFGELNRIAGMPNCFTFPMIIKSCG 121


>ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526049|gb|EEF28413.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 515

 Score = 75.9 bits (185), Expect(2) = 3e-18
 Identities = 39/81 (48%), Positives = 56/81 (69%)
 Frame = -3

Query: 340 RVIEERFISLLKNTCRSLKQIKVIQSKIITYGLEQNEYIAPKLVSVCAESKKMVYAQSVF 161
           R++EE+ ISLL + C++L  +  IQS II +GL+ N+YI PK+++  A  K+M +A  +F
Sbjct: 63  RLLEEKIISLLYS-CKTLNHLHQIQSHIINHGLQFNDYITPKIITSFALFKRMRHAHKLF 121

Query: 160 TRFFNPNVLVWNAMLKGYSDN 98
            +   PNV  WNAMLKGYS N
Sbjct: 122 DQIPEPNVSNWNAMLKGYSLN 142



 Score = 40.8 bits (94), Expect(2) = 3e-18
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = -1

Query: 90  RETLVMFNLMKSRDVRPNCFTFPVVLKS 7
           RE +V+F  M S D+ PNCF+FP+V+KS
Sbjct: 146 REVIVLFRKMISMDILPNCFSFPIVIKS 173


>ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score = 72.0 bits (175), Expect(2) = 1e-15
 Identities = 33/79 (41%), Positives = 53/79 (67%)
 Frame = -3

Query: 340 RVIEERFISLLKNTCRSLKQIKVIQSKIITYGLEQNEYIAPKLVSVCAESKKMVYAQSVF 161
           RV+E++FISLL+ TC +  ++  IQ++I+T+GLE N+Y+ P  ++ CA    +  A+ VF
Sbjct: 19  RVVEDKFISLLR-TCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVF 77

Query: 160 TRFFNPNVLVWNAMLKGYS 104
            +   PN   WNAM +GY+
Sbjct: 78  DKTAQPNGATWNAMFRGYA 96



 Score = 35.8 bits (81), Expect(2) = 1e-15
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 87  ETLVMFNLMKSRDVRPNCFTFPVVLKSC 4
           + +V+F  M      PNCFTFP+V+KSC
Sbjct: 103 DVVVLFARMHRAGASPNCFTFPMVVKSC 130