BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033925
         (540 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001004231.2| hypothetical chloroplast RF1 [Ranunculus mac...   179   2e-43
gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina]         166   3e-39
ref|YP_007317307.1| Ycf1 (chloroplast) [Camellia sinensis] gi|43...   160   9e-38
ref|YP_740709.1| hypothetical chloroplast RF1 [Nandina domestica...   160   1e-37
gb|ADD30903.1| putative RF1 protein [Aucuba japonica]                 159   3e-37

>ref|YP_001004231.2| hypothetical chloroplast RF1 [Ranunculus macranthus]
            gi|182705172|sp|A1XGT3.2|YCF1_RANMC RecName:
            Full=Putative membrane protein ycf1; Short=RF1
            gi|124074979|gb|ABC70801.2| hypothetical chloroplast RF1
            [Ranunculus macranthus]
          Length = 1788

 Score =  179 bits (455), Expect = 2e-43
 Identities = 89/135 (65%), Positives = 107/135 (79%)
 Frame = -2

Query: 407  ELENRNQEEKQHSVQGDIRSYAQNQKNLASDPSKKQKDVKEDYGGSDIQXXXXXXXXXXN 228
            +LENRNQEE Q  V+GD+ SY Q + N  SDP KKQ D KED+  S+IQ          N
Sbjct: 1482 DLENRNQEETQQPVRGDLGSYVQKENNPGSDPLKKQTDGKEDFDRSNIQRNINKKKSKSN 1541

Query: 227  IAAELDFFLKRYFLFQLKWNNAFNQKIINNVKVYCLLLRLRNPKEMAISSIQRDEMSLDV 48
            IAAELDFFLK+YFLFQL+W+N+F++KIINN+K+YCLLLRL+NPKE+AISSIQRDEMS+DV
Sbjct: 1542 IAAELDFFLKKYFLFQLRWDNSFSEKIINNIKIYCLLLRLKNPKEIAISSIQRDEMSMDV 1601

Query: 47   MLIPKAITLAKLIKR 3
            ML+PKA T  KL KR
Sbjct: 1602 MLVPKATTFIKLRKR 1616


>gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina]
          Length = 1909

 Score =  166 bits (419), Expect = 3e-39
 Identities = 85/135 (62%), Positives = 103/135 (76%)
 Frame = -2

Query: 407  ELENRNQEEKQHSVQGDIRSYAQNQKNLASDPSKKQKDVKEDYGGSDIQXXXXXXXXXXN 228
            ELENRNQEEK+ + Q D+ S  QN  NL SD S +QKDV+EDY GSD++          N
Sbjct: 1596 ELENRNQEEKEPAGQRDLGSDTQNHGNLGSDLSNQQKDVEEDYAGSDMKKRRKKKQSKSN 1655

Query: 227  IAAELDFFLKRYFLFQLKWNNAFNQKIINNVKVYCLLLRLRNPKEMAISSIQRDEMSLDV 48
              AELDFFLKRY LFQL+WN+  NQ++INN+KVYCLLLRL NP+E+AISSIQR EMSLD+
Sbjct: 1656 TEAELDFFLKRYLLFQLRWNDPLNQRLINNIKVYCLLLRLINPREIAISSIQRREMSLDI 1715

Query: 47   MLIPKAITLAKLIKR 3
            MLI K +TL +L+KR
Sbjct: 1716 MLIQKNLTLTELMKR 1730


>ref|YP_007317307.1| Ycf1 (chloroplast) [Camellia sinensis] gi|430728331|gb|AGA55655.1|
            Ycf1 (chloroplast) [Camellia sinensis]
          Length = 1873

 Score =  160 bits (406), Expect = 9e-38
 Identities = 79/135 (58%), Positives = 106/135 (78%)
 Frame = -2

Query: 407  ELENRNQEEKQHSVQGDIRSYAQNQKNLASDPSKKQKDVKEDYGGSDIQXXXXXXXXXXN 228
            EL+N+N++EK+ + Q D+RS AQNQ NL S PS +QKD++EDY  S+++          N
Sbjct: 1559 ELKNKNKKEKESAGQRDLRSNAQNQVNLVSVPSTEQKDIEEDYSESNMKNRKKKKQYKSN 1618

Query: 227  IAAELDFFLKRYFLFQLKWNNAFNQKIINNVKVYCLLLRLRNPKEMAISSIQRDEMSLDV 48
              AELDFFLK+Y LFQL+W+NA NQ++INN+KVYCLLLRLRNP+++ ISSIQR EM+LD+
Sbjct: 1619 TEAELDFFLKKYLLFQLRWDNALNQRMINNIKVYCLLLRLRNPRKITISSIQRREMNLDI 1678

Query: 47   MLIPKAITLAKLIKR 3
            MLI K +TL +L+KR
Sbjct: 1679 MLIQKNLTLTELMKR 1693


>ref|YP_740709.1| hypothetical chloroplast RF1 [Nandina domestica]
            gi|118574757|sp|Q09FQ2.1|YCF1_NANDO RecName:
            Full=Putative membrane protein ycf1; Short=RF1
            gi|114054530|gb|ABI49923.1| hypothetical chloroplast RF1
            [Nandina domestica]
          Length = 1843

 Score =  160 bits (404), Expect = 1e-37
 Identities = 90/139 (64%), Positives = 103/139 (74%), Gaps = 5/139 (3%)
 Frame = -2

Query: 404  LENRNQEEKQHSVQGDIRSYAQNQKNLASDPSKKQKD----VKEDYGG-SDIQXXXXXXX 240
            LE +N+EEK+   Q +I S  Q Q N  SDPS +QKD    VKEDY G SDIQ       
Sbjct: 1528 LELKNKEEKKKPAQENIGSDTQKQGNPGSDPSTQQKDIKKNVKEDYDGRSDIQKRKKKKQ 1587

Query: 239  XXXNIAAELDFFLKRYFLFQLKWNNAFNQKIINNVKVYCLLLRLRNPKEMAISSIQRDEM 60
               NIAAELD FLKRYFLFQL+W+N  N+KIINNVKVYCLLLRL+NPKE+AI+SIQRDEM
Sbjct: 1588 STGNIAAELDLFLKRYFLFQLRWDNPLNKKIINNVKVYCLLLRLKNPKEIAIASIQRDEM 1647

Query: 59   SLDVMLIPKAITLAKLIKR 3
            SLDVM I K +TLAKLI +
Sbjct: 1648 SLDVMPISKTLTLAKLINK 1666


>gb|ADD30903.1| putative RF1 protein [Aucuba japonica]
          Length = 1890

 Score =  159 bits (401), Expect = 3e-37
 Identities = 80/135 (59%), Positives = 102/135 (75%)
 Frame = -2

Query: 407  ELENRNQEEKQHSVQGDIRSYAQNQKNLASDPSKKQKDVKEDYGGSDIQXXXXXXXXXXN 228
            EL+N NQEEK+ + QGD+RSY QNQKNL S  S  QKD++EDY GSD +          N
Sbjct: 1577 ELKNLNQEEKEPTDQGDLRSYVQNQKNLGSLVSTHQKDIEEDYAGSDTKKHKKKKQYKSN 1636

Query: 227  IAAELDFFLKRYFLFQLKWNNAFNQKIINNVKVYCLLLRLRNPKEMAISSIQRDEMSLDV 48
              AEL  FLKRY LFQL+W++A NQ++INN+KVYCLLLRL NP+++ ISSIQR EMSLD+
Sbjct: 1637 TEAELKSFLKRYLLFQLRWDDALNQRMINNIKVYCLLLRLINPRKITISSIQRREMSLDI 1696

Query: 47   MLIPKAITLAKLIKR 3
            ML+ K +TL +L+K+
Sbjct: 1697 MLVQKNLTLPELMKK 1711