BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033896
         (292 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95230.1| retrotransposon protein, putative, unclassified [...    72   8e-22
gb|AAM91874.1| putative copia-like polyprotein [Oryza sativa Jap...    72   8e-22
gb|AAP54332.2| retrotransposon protein, putative, unclassified [...    72   8e-22
emb|CAE75905.1| OSJNBa0088I22.18 [Oryza sativa Japonica Group]         72   8e-22
gb|ABA95797.1| retrotransposon protein, putative, unclassified [...    69   2e-21

>gb|ABA95230.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 936

 Score = 72.0 bits (175), Expect(2) = 8e-22
 Identities = 32/53 (60%), Positives = 46/53 (86%)
 Frame = -1

Query: 166 GLRTVVLVYVDDIIITCDDTLNITKVKTDLGQFFDIKDLGPLRYFLGIEVARS 8
           GL+T+++VYVDD+IIT DD L I+++K +L + F++KDLG L+YFLGIE+ARS
Sbjct: 612 GLKTILVVYVDDMIITGDDCLEISRLKQNLSKEFEVKDLGQLKYFLGIEIARS 664



 Score = 56.6 bits (135), Expect(2) = 8e-22
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = -3

Query: 287 VYRLVKSVYGLKQSPRAWFQRFSTAIMSMGFT*CHSDHT 171
           V RL KS+YGLKQSPRAWF RF  A+  MG+  C+ DHT
Sbjct: 566 VLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHT 604


>gb|AAM91874.1| putative copia-like polyprotein [Oryza sativa Japonica Group]
          Length = 894

 Score = 72.0 bits (175), Expect(2) = 8e-22
 Identities = 32/53 (60%), Positives = 46/53 (86%)
 Frame = -1

Query: 166 GLRTVVLVYVDDIIITCDDTLNITKVKTDLGQFFDIKDLGPLRYFLGIEVARS 8
           GL+T+++VYVDD+IIT DD L I+++K +L + F++KDLG L+YFLGIE+ARS
Sbjct: 570 GLKTILVVYVDDMIITGDDCLEISRLKQNLSKEFEVKDLGQLKYFLGIEIARS 622



 Score = 56.6 bits (135), Expect(2) = 8e-22
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = -3

Query: 287 VYRLVKSVYGLKQSPRAWFQRFSTAIMSMGFT*CHSDHT 171
           V RL KS+YGLKQSPRAWF RF  A+  MG+  C+ DHT
Sbjct: 524 VLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHT 562


>gb|AAP54332.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 822

 Score = 72.0 bits (175), Expect(2) = 8e-22
 Identities = 32/53 (60%), Positives = 46/53 (86%)
 Frame = -1

Query: 166 GLRTVVLVYVDDIIITCDDTLNITKVKTDLGQFFDIKDLGPLRYFLGIEVARS 8
           GL+T+++VYVDD+IIT DD L I+++K +L + F++KDLG L+YFLGIE+ARS
Sbjct: 498 GLKTILVVYVDDMIITGDDCLEISRLKQNLSKEFEVKDLGQLKYFLGIEIARS 550



 Score = 56.6 bits (135), Expect(2) = 8e-22
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = -3

Query: 287 VYRLVKSVYGLKQSPRAWFQRFSTAIMSMGFT*CHSDHT 171
           V RL KS+YGLKQSPRAWF RF  A+  MG+  C+ DHT
Sbjct: 452 VLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHT 490


>emb|CAE75905.1| OSJNBa0088I22.18 [Oryza sativa Japonica Group]
          Length = 624

 Score = 72.0 bits (175), Expect(2) = 8e-22
 Identities = 32/53 (60%), Positives = 46/53 (86%)
 Frame = -1

Query: 166 GLRTVVLVYVDDIIITCDDTLNITKVKTDLGQFFDIKDLGPLRYFLGIEVARS 8
           GL+T+++VYVDD+IIT DD L I+++K +L + F++KDLG L+YFLGIE+ARS
Sbjct: 565 GLKTILVVYVDDMIITGDDCLKISRLKENLSKEFEVKDLGQLKYFLGIEIARS 617



 Score = 56.6 bits (135), Expect(2) = 8e-22
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = -3

Query: 287 VYRLVKSVYGLKQSPRAWFQRFSTAIMSMGFT*CHSDHT 171
           V RL KS+YGLKQSPRAWF RF  A+  MG+  C+ DHT
Sbjct: 519 VLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHT 557


>gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1588

 Score = 68.9 bits (167), Expect(2) = 2e-21
 Identities = 33/50 (66%), Positives = 40/50 (80%)
 Frame = -1

Query: 157  TVVLVYVDDIIITCDDTLNITKVKTDLGQFFDIKDLGPLRYFLGIEVARS 8
            T++ VYVDDI+IT DD   I  +K  LG+ F++KDLGPLRYFLGIEVARS
Sbjct: 1267 TILAVYVDDIVITGDDVEEIKCLKQRLGEAFEVKDLGPLRYFLGIEVARS 1316



 Score = 58.2 bits (139), Expect(2) = 2e-21
 Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 4/51 (7%)
 Frame = -3

Query: 287  VYRLVKSVYGLKQSPRAWFQRFSTAIMSMGFT*CHSDHT----RRASHCSL 147
            V RL KS+YGLKQSPRAWF RF  A+ +MG++ C+ DHT     R +H ++
Sbjct: 1218 VCRLKKSLYGLKQSPRAWFDRFRRALCNMGYSQCNGDHTVFYRHRGAHITI 1268