BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033890
         (601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]   241   9e-62
ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|2...   202   3e-50
ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containi...   195   4e-48
ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containi...   185   6e-45
gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arab...   184   1e-44

>emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  241 bits (614), Expect = 9e-62
 Identities = 117/201 (58%), Positives = 151/201 (75%), Gaps = 1/201 (0%)
 Frame = -2

Query: 600 DQQPSLWSPIERQCLSLLQRPNTTNSILQIHSFMLRNGLQTNVNLFTKFISACCSIVTVG 421
           +QQ SLWSPIER+CLSLLQ+  T  ++LQIH+FMLRN L+TN NLFTKFI+ C SI  + 
Sbjct: 142 NQQQSLWSPIERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLA 201

Query: 420 PL-DPLFKIRYARKVFDNRTQRDDAFLCNSMIKAHVDNYLFRDSMTLYRDLKCKTCFSPD 244
           PL DPL  I +AR++FD+R  RDDAFLCNSMIKA+V    + +S  LYRDL+  T F+PD
Sbjct: 202 PLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPD 261

Query: 243 NFTFPSLLKACGLNLAFKEGYQLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFD 64
           +FTF  L K+C LN+A  EG ++H  ++ +GFC DL+ +T LVDMY KF  M  +RK+FD
Sbjct: 262 SFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFD 321

Query: 63  EMPYRNQVSWTAVVVGYARAG 1
           EM  R+QVSWTA++ GY R+G
Sbjct: 322 EMIDRSQVSWTALIGGYVRSG 342



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 39/130 (30%), Positives = 63/130 (48%)
 Frame = -2

Query: 390 ARKVFDNRTQRDDAFLCNSMIKAHVDNYLFRDSMTLYRDLKCKTCFSPDNFTFPSLLKAC 211
           AR +FD   +++  F  N+MI  +  N    +++ L+ +++  T   PD  T  S+L A 
Sbjct: 409 ARSLFDAMPEKN-LFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAI 467

Query: 210 GLNLAFKEGYQLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSWT 31
               A   G  +H  + +          T L+DMY K  ++V SR VFD MP +   SW 
Sbjct: 468 ADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWN 527

Query: 30  AVVVGYARAG 1
           A++  +A  G
Sbjct: 528 ALINAFAING 537



 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 27/60 (45%), Positives = 39/60 (65%)
 Frame = -2

Query: 180 QLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSWTAVVVGYARAG 1
           +L DQ+++     D     T++D YVK  DM S+RK+FDEMP R+ VSWT ++ GY+  G
Sbjct: 349 KLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNG 404


>ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|222835186|gb|EEE73621.1|
           predicted protein [Populus trichocarpa]
          Length = 581

 Score =  202 bits (515), Expect = 3e-50
 Identities = 98/191 (51%), Positives = 130/191 (68%)
 Frame = -2

Query: 573 IERQCLSLLQRPNTTNSILQIHSFMLRNGLQTNVNLFTKFISACCSIVTVGPLDPLFKIR 394
           +ER+CL LLQR  T  ++LQIH+ +LRN +  NVN+ TKFI+ C           L   R
Sbjct: 1   MERECLFLLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTC---------GQLSSTR 51

Query: 393 YARKVFDNRTQRDDAFLCNSMIKAHVDNYLFRDSMTLYRDLKCKTCFSPDNFTFPSLLKA 214
           +AR +FDNR+ R D FLCNSMIK+HV      D+ TLY+DL+ +TCF PDNFTF  L K 
Sbjct: 52  HARHLFDNRSHRGDTFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKC 111

Query: 213 CGLNLAFKEGYQLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSW 34
           C L +A  EG + H  ++K+GFCFD++ ST LVDMY KF ++  +RKVF++MP R+ VSW
Sbjct: 112 CALRMAVWEGLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSW 171

Query: 33  TAVVVGYARAG 1
           TA++ GY R G
Sbjct: 172 TALIGGYVRRG 182



 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 39/130 (30%), Positives = 69/130 (53%)
 Frame = -2

Query: 390 ARKVFDNRTQRDDAFLCNSMIKAHVDNYLFRDSMTLYRDLKCKTCFSPDNFTFPSLLKAC 211
           AR +FD   +++     N+MI  +  N    +++ L+R+L+  T F P+  T  S+L A 
Sbjct: 249 ARFLFDAMPEKN-LVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAI 307

Query: 210 GLNLAFKEGYQLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSWT 31
               A + G  +H  + +      +   T+LVDMY+K  ++  +RKVF E+P +   +W 
Sbjct: 308 ATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWN 367

Query: 30  AVVVGYARAG 1
           A++ G+A  G
Sbjct: 368 ALINGFAMNG 377


>ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera] gi|297734603|emb|CBI16654.3| unnamed
           protein product [Vitis vinifera]
          Length = 577

 Score =  195 bits (496), Expect = 4e-48
 Identities = 95/168 (56%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
 Frame = -2

Query: 501 MLRNGLQTNVNLFTKFISACCSIVTVGPL-DPLFKIRYARKVFDNRTQRDDAFLCNSMIK 325
           MLRN L+TN NLFTKFI+ C SI  + PL DPL  I +AR++FD+R  RDDAFLCNSMIK
Sbjct: 1   MLRNALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIK 60

Query: 324 AHVDNYLFRDSMTLYRDLKCKTCFSPDNFTFPSLLKACGLNLAFKEGYQLHDQIMKMGFC 145
           A+V    + +S  LYRDL+  T F+PD+FTF  L K+C LN+A  EG ++H  ++ +GFC
Sbjct: 61  AYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFC 120

Query: 144 FDLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSWTAVVVGYARAG 1
            DL+ +T LVDMY KF  M  +RK+FDEM  R+QVSWTA++ GY R+G
Sbjct: 121 LDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSG 168



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 39/130 (30%), Positives = 63/130 (48%)
 Frame = -2

Query: 390 ARKVFDNRTQRDDAFLCNSMIKAHVDNYLFRDSMTLYRDLKCKTCFSPDNFTFPSLLKAC 211
           AR +FD   +++  F  N+MI  +  N    +++ L+ +++  T   PD  T  S+L A 
Sbjct: 235 ARSLFDAMPEKN-LFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAI 293

Query: 210 GLNLAFKEGYQLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSWT 31
               A   G  +H  + +          T L+DMY K  ++V SR VFD MP +   SW 
Sbjct: 294 ADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWN 353

Query: 30  AVVVGYARAG 1
           A++  +A  G
Sbjct: 354 ALINAFAING 363



 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 27/60 (45%), Positives = 39/60 (65%)
 Frame = -2

Query: 180 QLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSWTAVVVGYARAG 1
           +L DQ+++     D     T++D YVK  DM S+RK+FDEMP R+ VSWT ++ GY+  G
Sbjct: 175 KLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNG 230


>ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  185 bits (469), Expect = 6e-45
 Identities = 99/200 (49%), Positives = 131/200 (65%), Gaps = 2/200 (1%)
 Frame = -2

Query: 594 QPSLWSPIERQCLSLLQ-RPNTTNSILQIHSFMLRNGLQTNVNLFTKFISACCSIVTVGP 418
           Q +LWS  ER CL +LQ R  +  ++LQIH+F+LR+ L +N+NL T F++ C S+     
Sbjct: 8   QRTLWSNAERTCLHILQCRTKSIPTLLQIHAFILRHSLHSNLNLLTAFVTTCASLAASAK 67

Query: 417 LDPLFKIRYARKVFDNRTQRDDAFLCNSMIKAHVDNYLFRDSMTLYRDLKCKTC-FSPDN 241
             PL  I +AR+ F N T   D FLCNSMI AH     F    TL+RDL+ +   F+PD 
Sbjct: 68  R-PLAIINHARRFF-NATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDG 125

Query: 240 FTFPSLLKACGLNLAFKEGYQLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFDE 61
           +TF +L+K C   +A  EG  LH  ++K G CFDL+ +T LVDMYVKF  + S+RKVFDE
Sbjct: 126 YTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDE 185

Query: 60  MPYRNQVSWTAVVVGYARAG 1
           M  R++VSWTAV+VGYAR G
Sbjct: 186 MSVRSKVSWTAVIVGYARCG 205


>gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  184 bits (466), Expect = 1e-44
 Identities = 87/167 (52%), Positives = 117/167 (70%)
 Frame = -2

Query: 501 MLRNGLQTNVNLFTKFISACCSIVTVGPLDPLFKIRYARKVFDNRTQRDDAFLCNSMIKA 322
           MLR+ ++TNV +FTKF+    S V +G         YARK+FD R QRDD+FL NSMIKA
Sbjct: 1   MLRHAIETNVQIFTKFLVISASAVGIG---------YARKLFDQRPQRDDSFLSNSMIKA 51

Query: 321 HVDNYLFRDSMTLYRDLKCKTCFSPDNFTFPSLLKACGLNLAFKEGYQLHDQIMKMGFCF 142
           +++   + DS  LYRDL+ +TCF+PDNFTF +L K+C L++   +G QLH QI + GFC 
Sbjct: 52  YLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCA 111

Query: 141 DLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSWTAVVVGYARAG 1
           D++ ST +VDMY KF  M  +R  FDEMP+R++VSWTA++ GY R G
Sbjct: 112 DMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCG 158



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 39/130 (30%), Positives = 68/130 (52%)
 Frame = -2

Query: 390 ARKVFDNRTQRDDAFLCNSMIKAHVDNYLFRDSMTLYRDLKCKTCFSPDNFTFPSLLKAC 211
           ARK+FD   +R+     N+MI  +  N   ++ +TL+++++  T   PD+ T  S+L A 
Sbjct: 226 ARKLFDAMPERN-LVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAI 284

Query: 210 GLNLAFKEGYQLHDQIMKMGFCFDLFTSTTLVDMYVKFEDMVSSRKVFDEMPYRNQVSWT 31
               A   G   H  + +      +   T ++DMY K  ++  ++++FDEMP +   SW 
Sbjct: 285 SDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWN 344

Query: 30  AVVVGYARAG 1
           A++ GYA  G
Sbjct: 345 AMIHGYALNG 354