BLASTX nr result
ID: Cimicifuga21_contig00033740
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00033740
(609 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI30094.3| unnamed protein product [Vitis vinifera] 114 1e-23
ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23
ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 114 1e-23
ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23
ref|XP_002529164.1| pentatricopeptide repeat-containing protein,... 103 3e-20
>emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 114 bits (286), Expect = 1e-23
Identities = 50/82 (60%), Positives = 67/82 (81%)
Frame = -3
Query: 256 AKIPNAVRDHSTDHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKC 77
AKI +D + D N+A+ NWMIT S++G+I+EAR++FD+M + DV+TWTTVISGYIKC
Sbjct: 52 AKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKC 111
Query: 76 GLMRDARMLFDEIDAKKNVVTW 11
G++ +AR LFD +DAKKNVVTW
Sbjct: 112 GMIEEARRLFDRVDAKKNVVTW 133
Score = 59.3 bits (142), Expect = 5e-07
Identities = 26/68 (38%), Positives = 47/68 (69%)
Frame = -3
Query: 214 NIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARMLFDEID 35
N+ N MI +++ G+I A +F++MP+R+VV+W TV+S +CG + +AR LFD +
Sbjct: 160 NVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM- 218
Query: 34 AKKNVVTW 11
+++V++W
Sbjct: 219 PERDVISW 226
Score = 56.6 bits (135), Expect = 3e-06
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 26/96 (27%)
Frame = -3
Query: 220 DHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWT--------------------- 104
+ N+ N +++ ++ G+I EAR++FD+MP+RDV++WT
Sbjct: 189 ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERD 248
Query: 103 -----TVISGYIKCGLMRDARMLFDEIDAKKNVVTW 11
T+I+G I+ G +R AR LF+E+ KKNV++W
Sbjct: 249 LPSWNTMITGLIQNGDLRRARKLFNEM-PKKNVISW 283
Score = 55.1 bits (131), Expect = 1e-05
Identities = 25/68 (36%), Positives = 45/68 (66%)
Frame = -3
Query: 214 NIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARMLFDEID 35
N+ M+ + R KI +A K+F++MP+++VV+W T+I GY + G + A LF+++
Sbjct: 129 NVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM- 187
Query: 34 AKKNVVTW 11
++NVV+W
Sbjct: 188 PERNVVSW 195
>ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 114 bits (286), Expect = 1e-23
Identities = 50/82 (60%), Positives = 67/82 (81%)
Frame = -3
Query: 256 AKIPNAVRDHSTDHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKC 77
AKI +D + D N+A+ NWMIT S++G+I+EAR++FD+M + DV+TWTTVISGYIKC
Sbjct: 37 AKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKC 96
Query: 76 GLMRDARMLFDEIDAKKNVVTW 11
G++ +AR LFD +DAKKNVVTW
Sbjct: 97 GMIEEARRLFDRVDAKKNVVTW 118
Score = 66.2 bits (160), Expect = 4e-09
Identities = 29/70 (41%), Positives = 52/70 (74%)
Frame = -3
Query: 220 DHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARMLFDE 41
+ N+ N +++ ++ G+I EAR++FD+MP+RDV++WT +I+G K G + +AR+LFD
Sbjct: 174 ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDR 233
Query: 40 IDAKKNVVTW 11
+ ++NVV+W
Sbjct: 234 M-PERNVVSW 242
Score = 63.5 bits (153), Expect = 3e-08
Identities = 30/74 (40%), Positives = 51/74 (68%)
Frame = -3
Query: 232 DHSTDHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARM 53
D + N+ N MIT +++ ++ EA +F++MP+RD+ +W T+I+G I+ G +R AR
Sbjct: 232 DRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARK 291
Query: 52 LFDEIDAKKNVVTW 11
LF+E+ KKNV++W
Sbjct: 292 LFNEM-PKKNVISW 304
Score = 59.3 bits (142), Expect = 5e-07
Identities = 26/68 (38%), Positives = 47/68 (69%)
Frame = -3
Query: 214 NIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARMLFDEID 35
N+ N MI +++ G+I A +F++MP+R+VV+W TV+S +CG + +AR LFD +
Sbjct: 145 NVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM- 203
Query: 34 AKKNVVTW 11
+++V++W
Sbjct: 204 PERDVISW 211
Score = 55.1 bits (131), Expect = 1e-05
Identities = 25/68 (36%), Positives = 45/68 (66%)
Frame = -3
Query: 214 NIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARMLFDEID 35
N+ M+ + R KI +A K+F++MP+++VV+W T+I GY + G + A LF+++
Sbjct: 114 NVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM- 172
Query: 34 AKKNVVTW 11
++NVV+W
Sbjct: 173 PERNVVSW 180
>ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 114 bits (285), Expect = 1e-23
Identities = 51/81 (62%), Positives = 67/81 (82%)
Frame = -3
Query: 253 KIPNAVRDHSTDHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCG 74
KI + VRD S + N+A+SNW+IT+ +EGKI EAR+VF++MPDRDVV+WT VI+GYIKCG
Sbjct: 52 KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111
Query: 73 LMRDARMLFDEIDAKKNVVTW 11
++ +A+ LFD DA KNVVTW
Sbjct: 112 MIEEAKTLFDRNDAIKNVVTW 132
Score = 67.8 bits (164), Expect = 1e-09
Identities = 29/70 (41%), Positives = 52/70 (74%)
Frame = -3
Query: 220 DHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARMLFDE 41
+ N+ N +IT F + ++ EA+++F++MP+RDV++WTT+++G K G + DAR+LFD+
Sbjct: 188 ERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDK 247
Query: 40 IDAKKNVVTW 11
+ +NVV+W
Sbjct: 248 MPV-RNVVSW 256
>ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 114 bits (285), Expect = 1e-23
Identities = 51/81 (62%), Positives = 67/81 (82%)
Frame = -3
Query: 253 KIPNAVRDHSTDHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCG 74
KI + VRD S + N+A+SNW+IT+ +EGKI EAR+VF++MPDRDVV+WT VI+GYIKCG
Sbjct: 52 KISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCG 111
Query: 73 LMRDARMLFDEIDAKKNVVTW 11
++ +A+ LFD DA KNVVTW
Sbjct: 112 MIEEAKTLFDRNDAIKNVVTW 132
Score = 67.8 bits (164), Expect = 1e-09
Identities = 29/70 (41%), Positives = 52/70 (74%)
Frame = -3
Query: 220 DHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARMLFDE 41
+ N+ N +IT F + ++ EA+++F++MP+RDV++WTT+++G K G + DAR+LFD+
Sbjct: 188 ERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDK 247
Query: 40 IDAKKNVVTW 11
+ +NVV+W
Sbjct: 248 MPV-RNVVSW 256
>ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531388|gb|EEF33223.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 453
Score = 103 bits (256), Expect = 3e-20
Identities = 48/73 (65%), Positives = 57/73 (78%)
Frame = -3
Query: 229 HSTDHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARML 50
HS +A+ NW ITK REGKI EAR+VFD+M +RDV+TWTTVI+GYIKC L+ +AR L
Sbjct: 49 HSASSEVARFNWHITKLCREGKINEARQVFDRMLERDVITWTTVITGYIKCRLIVEARRL 108
Query: 49 FDEIDAKKNVVTW 11
FD DA KNVVTW
Sbjct: 109 FDRADAMKNVVTW 121
Score = 62.0 bits (149), Expect = 8e-08
Identities = 28/74 (37%), Positives = 52/74 (70%)
Frame = -3
Query: 232 DHSTDHNIAQSNWMITKFSREGKIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARM 53
D + N+ N MIT +++ +++EA ++F++MP+RD+ +W T+I+G+I+ ++ AR
Sbjct: 179 DKMPERNVVSWNAMITGYAKNMRLVEAFELFERMPERDLPSWNTMITGFIQNKELKLARK 238
Query: 52 LFDEIDAKKNVVTW 11
L DE+ +KNVV+W
Sbjct: 239 LLDEM-PEKNVVSW 251
Score = 55.5 bits (132), Expect = 7e-06
Identities = 22/52 (42%), Positives = 41/52 (78%)
Frame = -3
Query: 166 KIIEARKVFDQMPDRDVVTWTTVISGYIKCGLMRDARMLFDEIDAKKNVVTW 11
++ EAR++FD+MP RDV++WT +++G + G + +AR +FD++ ++NVV+W
Sbjct: 139 RVDEARRLFDEMPKRDVISWTAMVAGLARNGRIDEARKIFDKM-PERNVVSW 189