BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033698
         (230 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...    63   3e-08
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]            59   5e-07
emb|CAA19714.1| putative protein [Arabidopsis thaliana] gi|72695...    57   1e-06
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...    57   1e-06
emb|CAA19715.1| putative protein [Arabidopsis thaliana] gi|72695...    57   1e-06

>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/48 (62%), Positives = 35/48 (72%)
 Frame = -3

Query: 228 G*SEKHKGYRSLYLPTGRVYVSRHVVFDENTFPFQKSSPPLSQPMDNT 85
           G +EK+KGYR LY PTGR+Y+SRHVVFDENT PF+     L  P D T
Sbjct: 714 GYNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFESIYSHL-HPQDKT 760


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = -3

Query: 228 G*SEKHKGYRSLYLPTGRVYVSRHVVFDENTFPFQK 121
           G + ++KGYR LY PTGRVY+SRHV+FDE TFPF++
Sbjct: 712 GYNSQYKGYRCLYPPTGRVYISRHVIFDEETFPFKQ 747


>emb|CAA19714.1| putative protein [Arabidopsis thaliana] gi|7269573|emb|CAB79575.1|
           putative protein [Arabidopsis thaliana]
          Length = 819

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = -3

Query: 228 G*SEKHKGYRSLYLPTGRVYVSRHVVFDENTFPF 127
           G +EK+KGYR LY PTGR+Y+SRHV+FDE+ +PF
Sbjct: 41  GYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPF 74


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = -3

Query: 228 G*SEKHKGYRSLYLPTGRVYVSRHVVFDENTFPFQKSSPPLSQPMDNTTFTD*V*SIPS 52
           G +EK+KGYR  + PT RVY+SRHV+FDE++FPF  +   L  P     F   + S PS
Sbjct: 702 GYTEKYKGYRCFFPPTNRVYLSRHVLFDESSFPFIDTYTSLQHPSPTPMFDAWLKSFPS 760


>emb|CAA19715.1| putative protein [Arabidopsis thaliana] gi|7269574|emb|CAB79576.1|
           putative protein [Arabidopsis thaliana]
          Length = 1318

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = -3

Query: 228 G*SEKHKGYRSLYLPTGRVYVSRHVVFDENTFPF 127
           G +EK+KGYR LY PTGR+Y+SRHV+FDE+ +PF
Sbjct: 525 GYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPF 558