BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033680
         (350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002886897.1| PSII 47KDa protein [Arabidopsis lyrata subsp...    80   4e-27
gb|ABW05224.1| photosystem II CP47 protein, partial (chloroplast...    78   1e-26
gb|AAN32163.1| photosystem II CP47 protein, partial (chloroplast...    79   2e-26
dbj|BAD22294.1| photosystem II 47 kDa protein, chloroplast [Oryz...    75   8e-26
gb|AEX01398.1| photosystem II CP47 protein [Lemna trisulca]            80   1e-25

>ref|XP_002886897.1| PSII 47KDa protein [Arabidopsis lyrata subsp. lyrata]
           gi|297332738|gb|EFH63156.1| PSII 47KDa protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 508

 Score = 80.5 bits (197), Expect(2) = 4e-27
 Identities = 41/63 (65%), Positives = 47/63 (74%)
 Frame = -3

Query: 309 LVDGDGIVKADFFLKGQTQKYNIEQVGVNVEFYGGQLNGVN*SDLATTKTYGEPAQLG*I 130
           LVDGDGIV+AD   +    KY++EQVGV VEFYGG+LNGV+ SD AT K Y   AQLG I
Sbjct: 370 LVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEI 429

Query: 129 FEL 121
           FEL
Sbjct: 430 FEL 432



 Score = 65.9 bits (159), Expect(2) = 4e-27
 Identities = 30/43 (69%), Positives = 34/43 (79%)
 Frame = -2

Query: 130 F*IDWASLKACGNFQSSTRSWFTFGHATFALLFFFREIWHGAR 2
           F +D A+LK+ G F SS R WFTFGHA+FALLFFF  IWHGAR
Sbjct: 430 FELDRATLKSDGVFHSSPRGWFTFGHASFALLFFFGHIWHGAR 472


>gb|ABW05224.1| photosystem II CP47 protein, partial (chloroplast) [Wurmbea
           biglandulosa subsp. flindersica]
          Length = 474

 Score = 77.8 bits (190), Expect(2) = 1e-26
 Identities = 40/63 (63%), Positives = 46/63 (73%)
 Frame = -3

Query: 309 LVDGDGIVKADFFLKGQTQKYNIEQVGVNVEFYGGQLNGVN*SDLATTKTYGEPAQLG*I 130
           LVDGDGIV+AD   +    KY++EQVGV VE YGG+LNGV+ SD AT K Y   AQLG I
Sbjct: 336 LVDGDGIVRADVPFRRAESKYSVEQVGVTVEXYGGELNGVSYSDPATVKKYARRAQLGEI 395

Query: 129 FEL 121
           FEL
Sbjct: 396 FEL 398



 Score = 67.0 bits (162), Expect(2) = 1e-26
 Identities = 31/43 (72%), Positives = 34/43 (79%)
 Frame = -2

Query: 130 F*IDWASLKACGNFQSSTRSWFTFGHATFALLFFFREIWHGAR 2
           F +D A+LK+ G F SS R WFTFGHATFALLFFF  IWHGAR
Sbjct: 396 FELDRATLKSDGVFXSSPRGWFTFGHATFALLFFFGHIWHGAR 438


>gb|AAN32163.1| photosystem II CP47 protein, partial (chloroplast) [Roystonea
           princeps]
          Length = 498

 Score = 79.0 bits (193), Expect(2) = 2e-26
 Identities = 40/63 (63%), Positives = 46/63 (73%)
 Frame = -3

Query: 309 LVDGDGIVKADFFLKGQTQKYNIEQVGVNVEFYGGQLNGVN*SDLATTKTYGEPAQLG*I 130
           LVDGDGIV+AD   +    KY++EQVGV VEFYGG+LNGV+  D AT K Y   AQLG I
Sbjct: 360 LVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYGDPATVKKYARRAQLGEI 419

Query: 129 FEL 121
           FEL
Sbjct: 420 FEL 422



 Score = 65.1 bits (157), Expect(2) = 2e-26
 Identities = 30/43 (69%), Positives = 33/43 (76%)
 Frame = -2

Query: 130 F*IDWASLKACGNFQSSTRSWFTFGHATFALLFFFREIWHGAR 2
           F +D A+LK+ G F SS R WFTFGHATFALLFFF  IWHG R
Sbjct: 420 FELDRATLKSDGVFXSSPRGWFTFGHATFALLFFFGHIWHGXR 462


>dbj|BAD22294.1| photosystem II 47 kDa protein, chloroplast [Oryza sativa Japonica
           Group] gi|50726527|dbj|BAD34134.1| photosystem II 47 kDa
           protein, chloroplast [Oryza sativa Japonica Group]
          Length = 508

 Score = 74.7 bits (182), Expect(2) = 8e-26
 Identities = 38/63 (60%), Positives = 46/63 (73%)
 Frame = -3

Query: 309 LVDGDGIVKADFFLKGQTQKYNIEQVGVNVEFYGGQLNGVN*SDLATTKTYGEPAQLG*I 130
           LVD +GIV+AD   +    KY++EQVGV VEFYGG+LNGV+ SD AT K Y   +QLG I
Sbjct: 370 LVDEEGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRSQLGEI 429

Query: 129 FEL 121
           FEL
Sbjct: 430 FEL 432



 Score = 67.4 bits (163), Expect(2) = 8e-26
 Identities = 31/43 (72%), Positives = 34/43 (79%)
 Frame = -2

Query: 130 F*IDWASLKACGNFQSSTRSWFTFGHATFALLFFFREIWHGAR 2
           F +D A+LK+ G F SS R WFTFGHATFALLFFF  IWHGAR
Sbjct: 430 FELDRATLKSDGVFHSSPRGWFTFGHATFALLFFFGHIWHGAR 472


>gb|AEX01398.1| photosystem II CP47 protein [Lemna trisulca]
          Length = 498

 Score = 80.5 bits (197), Expect(2) = 1e-25
 Identities = 41/63 (65%), Positives = 47/63 (74%)
 Frame = -3

Query: 309 LVDGDGIVKADFFLKGQTQKYNIEQVGVNVEFYGGQLNGVN*SDLATTKTYGEPAQLG*I 130
           LVDGDGIV+AD   +    KY++EQVGV VEFYGG+LNGV+ SD AT K Y   AQLG I
Sbjct: 360 LVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEI 419

Query: 129 FEL 121
           FEL
Sbjct: 420 FEL 422



 Score = 60.8 bits (146), Expect(2) = 1e-25
 Identities = 28/43 (65%), Positives = 32/43 (74%)
 Frame = -2

Query: 130 F*IDWASLKACGNFQSSTRSWFTFGHATFALLFFFREIWHGAR 2
           F +D A+LK+ G F SS R WFTFGHA+FALL FF  IWHG R
Sbjct: 420 FELDRATLKSDGVFXSSPRGWFTFGHASFALLXFFGHIWHGXR 462