BLASTX nr result

ID: Cimicifuga21_contig00033665 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033665
         (522 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307899.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-11
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...    63   3e-08
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    60   2e-07
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    60   2e-07
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    55   6e-06

>ref|XP_002307899.1| predicted protein [Populus trichocarpa] gi|222853875|gb|EEE91422.1|
           predicted protein [Populus trichocarpa]
          Length = 359

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
 Frame = -2

Query: 521 ESLGDQMLFIGTNPSMSVSAEGIPGFIGNCIYFTDDRWPFFAAGGNPEHVCSDNGVFYLD 342
           E++G+Q++F+G N +  V A   PGF GNC+Y++ D W  F      +   +D GV+ L+
Sbjct: 265 ENIGNQIIFLGRNHTKCVPAIDFPGFEGNCVYYSCDLWNHFRVLPMDQRDYADMGVYGLE 324

Query: 341 NGCIESFIP-------PDDTHSFRFHPIWITPS 264
               E F P       P+  HSF++ PIWITP+
Sbjct: 325 RRGKEEFFPENYGAFMPNSEHSFKYPPIWITPN 357


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
 Frame = -2

Query: 518 SLGDQMLFIGTNPSMSVSAEGIPGFIGNCIYFTDDRWPFFAAGGNPEHVCS-DNGVFYLD 342
           SLGD MLFIG N S+++SA G+ G +G+CIY+TDD    ++A     H+   D G+F L 
Sbjct: 307 SLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDD----YSANNYDGHIGEHDLGIFKLS 362

Query: 341 NGCIESFIPPDDTHSFRF----HPIWITPS 264
           +G IE  +P    +S+       P+WI+P+
Sbjct: 363 DGSIEP-LPCYPRNSYSRLQWPPPLWISPN 391


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
 Frame = -2

Query: 518 SLGDQMLFIGTNPSMSVSAEGIPGFIGNCIYFTDD--RWPFFAAGGNPEHVCSDNGVFYL 345
           SLGD+ LF+G N S+S+S+   PG  GNCIY+TDD     +   GG       D G+F L
Sbjct: 307 SLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGE-----QDLGIFNL 361

Query: 344 DNGCIESFIPPDDTHSFRFH---PIWITPS 264
           ++G IE    P     FR     P+W+TP+
Sbjct: 362 EDGSIE----PLPCSHFRIRWPPPLWVTPN 387


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
 Frame = -2

Query: 518 SLGDQMLFIGTNPSMSVSAEGIPGFIGNCIYFTDD--RWPFFAAGGNPEHVCSDNGVFYL 345
           SLGD+ LF+G N S+S+S+   PG  GNCIY+TDD     +   GG       D G+F L
Sbjct: 307 SLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGE-----QDLGIFNL 361

Query: 344 DNGCIESFIPPDDTHSFRFH---PIWITPS 264
           ++G IE    P     FR     P+W+TP+
Sbjct: 362 EDGSIE----PLPCSHFRIRWPPPLWVTPN 387


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
 Frame = -2

Query: 518 SLGDQMLFIGTNPSMSVSAEGIPGFIGNCIYFTDDRWPFFAAGGNPEHVCSDNGVFYLDN 339
           +LGD+ LFIG N S+S+SA    G +GNCIY+TDD       G   +H   D G+F L +
Sbjct: 312 TLGDKALFIGENSSLSLSATDFSGCMGNCIYYTDDYLDANYDGHFGDH---DLGIFKLCD 368

Query: 338 GCIESF--IPPDDTHSFRFH-PIWITPS 264
             IE     P + T   ++  P+W++P+
Sbjct: 369 ETIEPLPCYPRNFTSPLQWSPPLWVSPN 396


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