BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033599
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   111   7e-23
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   110   9e-23
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   100   1e-19
emb|CAD45561.1| reverse transcriptase [Elaeis guineensis]             100   2e-19
emb|CAD45562.1| reverse transcriptase [Elaeis guineensis]             100   2e-19

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  111 bits (277), Expect = 7e-23
 Identities = 53/103 (51%), Positives = 72/103 (69%)
 Frame = +1

Query: 7   NIISKEQSGFISGKSIHSNVGLASEMINELDNKKRGGNVIIKMDISQAYDTVNWDFMYEV 186
           +IISKEQ GF+ G++I   + L SE IN LDNK  GGN+ +K+D+++A+DT+NWDF+  V
Sbjct: 280 SIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLV 339

Query: 187 LKRKGFPQTWINWIMTINNSIKMSILFNGGPIGFFPMGRGLKQ 315
           LK  GF + + NWI TI +S KM I  NG   GFF   RG++Q
Sbjct: 340 LKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQ 382


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  110 bits (276), Expect = 9e-23
 Identities = 54/103 (52%), Positives = 72/103 (69%)
 Frame = +1

Query: 7   NIISKEQSGFISGKSIHSNVGLASEMINELDNKKRGGNVIIKMDISQAYDTVNWDFMYEV 186
           NI+S+EQ GFI G++I   V LASE IN LD K  GGN+  K+DIS+A+DT+NW F+ +V
Sbjct: 219 NIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKV 278

Query: 187 LKRKGFPQTWINWIMTINNSIKMSILFNGGPIGFFPMGRGLKQ 315
           LK+ GF +T+ NWI  I  S K+SI  NG   G+F   RG++Q
Sbjct: 279 LKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGVRQ 321


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  100 bits (249), Expect = 1e-19
 Identities = 47/102 (46%), Positives = 72/102 (70%)
 Frame = +1

Query: 10  IISKEQSGFISGKSIHSNVGLASEMINELDNKKRGGNVIIKMDISQAYDTVNWDFMYEVL 189
           IIS EQ GFI  + I   V LASE IN L+ ++ GGNV +K+DI++A+DT++W+F+  VL
Sbjct: 546 IISVEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVL 605

Query: 190 KRKGFPQTWINWIMTINNSIKMSILFNGGPIGFFPMGRGLKQ 315
           +R GF + +++WI+ I  S ++S+L NG  +GFF    G++Q
Sbjct: 606 QRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGVRQ 647


>emb|CAD45561.1| reverse transcriptase [Elaeis guineensis]
          Length = 137

 Score =  100 bits (248), Expect = 2e-19
 Identities = 46/102 (45%), Positives = 67/102 (65%)
 Frame = +1

Query: 10  IISKEQSGFISGKSIHSNVGLASEMINELDNKKRGGNVIIKMDISQAYDTVNWDFMYEVL 189
           IIS+ Q  F+ G++I  N+ LA E+  E + K  G NVIIK+D+ +AYD + WDF+++VL
Sbjct: 31  IISENQGAFVKGRNILENISLAQELTQEFNRKCYGHNVIIKLDMGKAYDRLEWDFLFQVL 90

Query: 190 KRKGFPQTWINWIMTINNSIKMSILFNGGPIGFFPMGRGLKQ 315
            R GF   W+N+I  +  +   S+L+NGG  GFF   RGL+Q
Sbjct: 91  LRFGFHPGWVNYIRAMFTNCWFSVLYNGGVHGFFKSTRGLRQ 132


>emb|CAD45562.1| reverse transcriptase [Elaeis guineensis]
          Length = 137

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 46/102 (45%), Positives = 67/102 (65%)
 Frame = +1

Query: 10  IISKEQSGFISGKSIHSNVGLASEMINELDNKKRGGNVIIKMDISQAYDTVNWDFMYEVL 189
           IIS+ Q  F+ G++I  N+ LA E+  E + K  G NVIIK+D+ +AYD + WDF+++VL
Sbjct: 31  IISENQGAFVKGRNILENISLAQELTQEFNRKCYGHNVIIKLDMGKAYDWLEWDFLFQVL 90

Query: 190 KRKGFPQTWINWIMTINNSIKMSILFNGGPIGFFPMGRGLKQ 315
            R GF   W+N+I  +  +   S+L+NGG  GFF   RGL+Q
Sbjct: 91  LRFGFHPGWVNYIRAMFTNCWFSVLYNGGVHGFFKSTRGLRQ 132