BLASTX nr result

ID: Cimicifuga21_contig00033529 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033529
         (374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63115.1| hypothetical protein 18.t00011 [Asparagus officin...   160   8e-38
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...   126   2e-27
ref|XP_003530517.1| PREDICTED: uncharacterized protein LOC100800...   117   1e-24
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     117   1e-24
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|...   117   1e-24

>gb|ABD63115.1| hypothetical protein 18.t00011 [Asparagus officinalis]
          Length = 887

 Score =  160 bits (406), Expect = 8e-38
 Identities = 73/120 (60%), Positives = 92/120 (76%)
 Frame = +1

Query: 13  ATQLFFQNVYIHFGLPQSIIDDRDSKFLSRCWKTLWGMMDTQLKKSTAFHPQRNGQT*VL 192
           A QLFF++V+ HFGL  SII DRD +FL   W +LW +MDT+ KKST FHPQ +GQT V+
Sbjct: 596 AAQLFFEHVWKHFGLSNSIISDRDRRFLRHFWDSLWSLMDTRQKKSTIFHPQTDGQTEVV 655

Query: 193 NQTIAQLLYGYNQ*RRRSWDENLPYVQYCYNRAIHGSTGKSPFEACYGFVLQSPIDVVFS 372
           N+TI  +L GYN    + WDE+LPY+Q+ +NRAIHGS+GKSPFE CYGF+  SP D+VFS
Sbjct: 656 NRTIIYMLRGYNFKHPKIWDESLPYLQFVFNRAIHGSSGKSPFETCYGFLPSSPFDIVFS 715


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score =  126 bits (316), Expect = 2e-27
 Identities = 58/115 (50%), Positives = 82/115 (71%)
 Frame = +1

Query: 22   LFFQNVYIHFGLPQSIIDDRDSKFLSRCWKTLWGMMDTQLKKSTAFHPQRNGQT*VLNQT 201
            LFF+ V    G+P++I+ DRD+KFLS  W+ LWG + T+L  STA HPQ +GQT V+N+T
Sbjct: 1036 LFFKEVVRLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLYSTACHPQTDGQTEVVNRT 1095

Query: 202  IAQLLYGYNQ*RRRSWDENLPYVQYCYNRAIHGSTGKSPFEACYGFVLQSPIDVV 366
            + QLL    +   +SW+E+LPYV++ YNRAIH +T  SPFE  YGF   +P+D++
Sbjct: 1096 LTQLLRVVIRKNLKSWEESLPYVEFAYNRAIHSTTNMSPFEVAYGFNPLTPLDLI 1150


>ref|XP_003530517.1| PREDICTED: uncharacterized protein LOC100800881 [Glycine max]
          Length = 1746

 Score =  117 bits (293), Expect = 1e-24
 Identities = 55/115 (47%), Positives = 79/115 (68%)
 Frame = +1

Query: 22   LFFQNVYIHFGLPQSIIDDRDSKFLSRCWKTLWGMMDTQLKKSTAFHPQRNGQT*VLNQT 201
            LFF+ +    GLP+SI+ DRD+KFLS  W+TLWG + T+L  ST  HPQ +GQT V+N+T
Sbjct: 1241 LFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKLLFSTTCHPQTDGQTEVVNRT 1300

Query: 202  IAQLLYGYNQ*RRRSWDENLPYVQYCYNRAIHGSTGKSPFEACYGFVLQSPIDVV 366
            +  LL    +   +SW+  LP+V++ YNRA+H +T  SPFE  YGF   +P+D++
Sbjct: 1301 LGTLLRTVLKKNLKSWEACLPHVEFAYNRAVHSTTNCSPFEIVYGFNPLTPLDLL 1355


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  117 bits (293), Expect = 1e-24
 Identities = 54/115 (46%), Positives = 77/115 (66%)
 Frame = +1

Query: 22   LFFQNVYIHFGLPQSIIDDRDSKFLSRCWKTLWGMMDTQLKKSTAFHPQRNGQT*VLNQT 201
            LFF  +    G+P++I+ DRD+KFLS  WKTLW  + T+L  ST  HPQ +GQT V+N+T
Sbjct: 1316 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 1375

Query: 202  IAQLLYGYNQ*RRRSWDENLPYVQYCYNRAIHGSTGKSPFEACYGFVLQSPIDVV 366
            ++ LL    +   + W+E LP+V++ YNRA+H +T   PFE  YGF   SPID++
Sbjct: 1376 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLL 1430


>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 681

 Score =  117 bits (293), Expect = 1e-24
 Identities = 54/115 (46%), Positives = 77/115 (66%)
 Frame = +1

Query: 22  LFFQNVYIHFGLPQSIIDDRDSKFLSRCWKTLWGMMDTQLKKSTAFHPQRNGQT*VLNQT 201
           LFF  +    G+P++I+ DRD+KFLS  WKTLW  + T+L  ST  HPQ +GQT V+N+T
Sbjct: 284 LFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRT 343

Query: 202 IAQLLYGYNQ*RRRSWDENLPYVQYCYNRAIHGSTGKSPFEACYGFVLQSPIDVV 366
           ++ LL    +   + W+E LP+V++ YNRA+H +T   PFE  YGF   SPID++
Sbjct: 344 LSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLL 398


Top