BLASTX nr result
ID: Cimicifuga21_contig00033487
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00033487
(284 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003610566.1| Pentatricopeptide repeat-containing protein ... 129 2e-28
ref|XP_003593079.1| Pentatricopeptide repeat-containing protein ... 126 2e-27
ref|XP_003518279.1| PREDICTED: putative pentatricopeptide repeat... 125 3e-27
ref|XP_004165422.1| PREDICTED: putative pentatricopeptide repeat... 122 4e-26
ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat... 122 4e-26
>ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511621|gb|AES92763.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 598
Score = 129 bits (324), Expect = 2e-28
Identities = 65/91 (71%), Positives = 71/91 (78%)
Frame = -1
Query: 281 GNKVVQTSLLDFYAKCGVVEDARRVFDRMSDVDVVAWTAMISGYAKTGMMEDARRLFDVM 102
GNK+VQT+LLD YAKCG V DAR VFD M D DVVAWTAMI GYAK G M DAR LFD M
Sbjct: 148 GNKIVQTALLDMYAKCGYVCDARDVFDGMVDRDVVAWTAMICGYAKAGRMVDARLLFDNM 207
Query: 101 VERNVVSWTAMVAGYANLGDIRAAKELFDEM 9
ERN +WT MVAGYAN GD++AA EL+D M
Sbjct: 208 GERNSFTWTTMVAGYANYGDMKAAMELYDVM 238
Score = 61.6 bits (148), Expect = 6e-08
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = -1
Query: 179 VAWTAMISGYAKTGMMEDARRLFDVMVERNVVSWTAMVAGYANLGDIRAAKELFDEMPE 3
+ TA++ YAK G + DAR +FD MV+R+VV+WTAM+ GYA G + A+ LFD M E
Sbjct: 151 IVQTALLDMYAKCGYVCDARDVFDGMVDRDVVAWTAMICGYAKAGRMVDARLLFDNMGE 209
Score = 61.2 bits (147), Expect = 8e-08
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = -1
Query: 278 NKVVQTSLLDFYAKCGVVEDARRVFDRMSDVDVVAWTAMISGYAKTGMMEDARRLFD-VM 102
N T+++ YA G ++ A ++D M+ + V W AMI+GY K G + +ARR+FD +
Sbjct: 211 NSFTWTTMVAGYANYGDMKAAMELYDVMNGKEEVTWVAMIAGYGKLGNVSEARRIFDEIP 270
Query: 101 VERNVVSWTAMVAGYANLGDIRAAKELFDEM 9
V N + A++A YA G R A E++++M
Sbjct: 271 VPLNPSTCAALLACYAQNGHAREAIEMYEKM 301
>ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360447|gb|ABN08457.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355482127|gb|AES63330.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 558
Score = 126 bits (317), Expect = 2e-27
Identities = 64/91 (70%), Positives = 71/91 (78%)
Frame = -1
Query: 281 GNKVVQTSLLDFYAKCGVVEDARRVFDRMSDVDVVAWTAMISGYAKTGMMEDARRLFDVM 102
GNK+VQT+LLD YAKCG V DAR VFD + D DVVAWTAMI GYAK G M DAR LFD M
Sbjct: 148 GNKIVQTALLDMYAKCGHVCDARDVFDGIVDRDVVAWTAMICGYAKAGRMVDARFLFDNM 207
Query: 101 VERNVVSWTAMVAGYANLGDIRAAKELFDEM 9
ERN +WT MVAGYAN GD++AA EL+D M
Sbjct: 208 GERNSFTWTTMVAGYANYGDMKAAMELYDVM 238
Score = 62.8 bits (151), Expect = 3e-08
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = -1
Query: 278 NKVVQTSLLDFYAKCGVVEDARRVFDRMSDVDVVAWTAMISGYAKTGMMEDARRLFD-VM 102
N T+++ YA G ++ A ++D M+ D V W AMI+GY K G + +ARR+FD +
Sbjct: 211 NSFTWTTMVAGYANYGDMKAAMELYDVMNGKDEVTWVAMIAGYGKLGNVSEARRIFDEIT 270
Query: 101 VERNVVSWTAMVAGYANLGDIRAAKELFDEM 9
V N + A++A YA G R A E++++M
Sbjct: 271 VPWNPSTCAALLACYAQNGHAREAIEMYEKM 301
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/59 (49%), Positives = 41/59 (69%)
Frame = -1
Query: 179 VAWTAMISGYAKTGMMEDARRLFDVMVERNVVSWTAMVAGYANLGDIRAAKELFDEMPE 3
+ TA++ YAK G + DAR +FD +V+R+VV+WTAM+ GYA G + A+ LFD M E
Sbjct: 151 IVQTALLDMYAKCGHVCDARDVFDGIVDRDVVAWTAMICGYAKAGRMVDARFLFDNMGE 209
>ref|XP_003518279.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 552
Score = 125 bits (315), Expect = 3e-27
Identities = 61/91 (67%), Positives = 71/91 (78%)
Frame = -1
Query: 281 GNKVVQTSLLDFYAKCGVVEDARRVFDRMSDVDVVAWTAMISGYAKTGMMEDARRLFDVM 102
GNK+VQT+LLD YAK G + DAR VFD M D DVVAWTAM+ GYAK GMM DA+ LFD M
Sbjct: 145 GNKIVQTALLDMYAKSGCISDARAVFDGMDDRDVVAWTAMVCGYAKVGMMVDAQWLFDKM 204
Query: 101 VERNVVSWTAMVAGYANLGDIRAAKELFDEM 9
ERN +WTAMVAGYAN D++ AK+L+D M
Sbjct: 205 GERNSFTWTAMVAGYANCEDMKTAKKLYDVM 235
Score = 65.5 bits (158), Expect = 4e-09
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = -1
Query: 278 NKVVQTSLLDFYAKCGVVEDARRVFDRMSDVDVVAWTAMISGYAKTGMMEDARRLFD-VM 102
N T+++ YA C ++ A++++D M+D + V W AMI+GY K G + +ARR+FD +
Sbjct: 208 NSFTWTAMVAGYANCEDMKTAKKLYDVMNDKNEVTWVAMIAGYGKLGNVREARRVFDGIP 267
Query: 101 VERNVVSWTAMVAGYANLGDIRAAKELFDEMPE 3
V + + AM+A YA G + A +++++M E
Sbjct: 268 VPQGASACAAMLACYAQHGYAKEAIDMYEKMRE 300
Score = 62.4 bits (150), Expect = 4e-08
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = -1
Query: 179 VAWTAMISGYAKTGMMEDARRLFDVMVERNVVSWTAMVAGYANLGDIRAAKELFDEMPE 3
+ TA++ YAK+G + DAR +FD M +R+VV+WTAMV GYA +G + A+ LFD+M E
Sbjct: 148 IVQTALLDMYAKSGCISDARAVFDGMDDRDVVAWTAMVCGYAKVGMMVDAQWLFDKMGE 206
>ref|XP_004165422.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 427
Score = 122 bits (305), Expect = 4e-26
Identities = 56/92 (60%), Positives = 72/92 (78%)
Frame = -1
Query: 278 NKVVQTSLLDFYAKCGVVEDARRVFDRMSDVDVVAWTAMISGYAKTGMMEDARRLFDVMV 99
NK+V TSL+D YAKCG + DA +F + D D+VAWT+MI GY+K GMM+DA+ LFD M
Sbjct: 50 NKIVLTSLMDMYAKCGFILDAESLFFAIDDKDIVAWTSMIRGYSKLGMMDDAQDLFDKMG 109
Query: 98 ERNVVSWTAMVAGYANLGDIRAAKELFDEMPE 3
+RN SWT MVAGYAN G+++AAK+L+D MPE
Sbjct: 110 QRNSFSWTTMVAGYANWGNMKAAKQLYDAMPE 141
>ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 456
Score = 122 bits (305), Expect = 4e-26
Identities = 56/92 (60%), Positives = 72/92 (78%)
Frame = -1
Query: 278 NKVVQTSLLDFYAKCGVVEDARRVFDRMSDVDVVAWTAMISGYAKTGMMEDARRLFDVMV 99
NK+V TSL+D YAKCG + DA +F + D D+VAWT+MI GY+K GMM+DA+ LFD M
Sbjct: 50 NKIVLTSLMDMYAKCGFILDAESLFFAIDDKDIVAWTSMIRGYSKLGMMDDAQDLFDKMG 109
Query: 98 ERNVVSWTAMVAGYANLGDIRAAKELFDEMPE 3
+RN SWT MVAGYAN G+++AAK+L+D MPE
Sbjct: 110 QRNSFSWTTMVAGYANWGNMKAAKQLYDAMPE 141