BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033294
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containi...    90   3e-16
ref|XP_002518060.1| pentatricopeptide repeat-containing protein,...    83   3e-14
ref|XP_002312829.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|2...    75   7e-12
ref|NP_201043.1| pentatricopeptide repeat-containing protein [Ar...    66   4e-09

>ref|XP_002268526.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g62370-like [Vitis vinifera]
          Length = 1101

 Score = 89.7 bits (221), Expect = 3e-16
 Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 3/160 (1%)
 Frame = -3

Query: 473 KKPFRSCRLFFFDKNTNPIAPNSCSRPLTISPLPIDPINSQNHESLCFSLADQLISRGLI 294
           KK  +  RLFF  K        +CS  L   P P     +++H  LCF+L D+LI RG++
Sbjct: 3   KKGLKPRRLFFTPKKNLA----TCSPAL--DPPPSSAPTTEHHNKLCFTLTDRLIRRGVL 56

Query: 293 PSAQGVIDRLIKHXXXXXXXXXXXXXAHSRGINLN---WSSLIQKLLTLGKPSMAEAVFA 123
              Q V+ R+IK              A +RG+ L+   +  L++KL+  G+   AEAV+ 
Sbjct: 57  SLGQQVVRRMIKQSPSVSDAILAVEFAAARGLELDSCGYGVLLRKLVGSGEHRFAEAVYR 116

Query: 122 ENVLGKGIVPVPASVSQSMIICYCRLGKLREALICMDEVF 3
           + V+ +GI+P  +    SM+ICYC LGKL EA+   D +F
Sbjct: 117 DYVIARGIIP-DSETLNSMVICYCNLGKLEEAMAHFDRLF 155


>ref|XP_002518060.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542656|gb|EEF44193.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 402

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 58/162 (35%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
 Frame = -3

Query: 482 MIAKKPFRSCRLFFFDKNTNPIAPNSCSRPLTISPLPIDPINSQNHESLCFSLADQLISR 303
           MI + P  S   F F      I+  S +  L I P      N   H++LCFSLA+ L  R
Sbjct: 1   MIKRPPSYS---FHFKTRKRKISTCSAAAYLDIPPPTATLPNG--HKTLCFSLAENLFRR 55

Query: 302 GLIPSAQGVIDRLIKHXXXXXXXXXXXXXAHSRGINLN---WSSLIQKLLTLGKPSMAEA 132
           G + SAQ +I R++               A SRGINL+   +++ ++KL+ LG+P+ A  
Sbjct: 56  GRLASAQEIIQRIVTDSSTVPDAISTVDFAASRGINLSVGIYAAFVRKLVDLGEPNFAYT 115

Query: 131 VFAENVLGKGIVPVPASVSQSMIICYCRLGKLREALICMDEV 6
           V+ E++  + I P  AS++ SMIIC+ +LGKL EA +  D++
Sbjct: 116 VYCESI-NRSIQP-NASITNSMIICFVKLGKLEEARLLFDKL 155


>ref|XP_002312829.1| predicted protein [Populus trichocarpa] gi|222849237|gb|EEE86784.1|
           predicted protein [Populus trichocarpa]
          Length = 734

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
 Frame = -3

Query: 482 MIAKKPFRSCRLFFFDKNTNPIAPNSCSRPLTISPLPIDPINSQNHESLCFSLADQLISR 303
           MI ++PF   R  +F     PI  ++C+ PL   P+      S +H SLC SL   L+ R
Sbjct: 1   MIKRRPFY--RSLYFKPKKRPIT-STCAVPLDPQPI------SNDHTSLCQSLVHDLLRR 51

Query: 302 GLIPSAQGVIDRLIKHXXXXXXXXXXXXXAHSRGINLNWS---SLIQKLLTLGKPSMAEA 132
           GL+ SAQ VI R I               A + G++L       L++KL+ LG+P  A  
Sbjct: 52  GLLSSAQQVIQRFIASSPTVPDALSAIEFASASGVDLGLGISCELLRKLVDLGEPLSAHE 111

Query: 131 VFAENVLGKGIVPVPASVSQSMIICYCRLGKLREALICMDEV 6
            + ++V+ +G  P  +++  SMIIC  +LGKL +A+   D +
Sbjct: 112 FYRDHVIARGTEP-DSNIVNSMIICLAKLGKLDDAVRLFDRL 152


>ref|XP_002328242.1| predicted protein [Populus trichocarpa] gi|222837757|gb|EEE76122.1|
           predicted protein [Populus trichocarpa]
          Length = 893

 Score = 75.1 bits (183), Expect = 7e-12
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
 Frame = -3

Query: 482 MIAKKPFRSCRLFFFDKNTNPIAPNSCSRPLTISPLPIDPINSQNHESLCFSLADQLISR 303
           MI ++PF  C   +F     PI  ++C+  L   P+P D      H SLC SL   L+ R
Sbjct: 1   MIKRRPF--CHALYFKPKKGPIT-STCAVSLDPQPIPND------HTSLCQSLVHDLLRR 51

Query: 302 GLIPSAQGVIDRLIKHXXXXXXXXXXXXXAHSRGINLN---WSSLIQKLLTLGKPSMAEA 132
           GL+ SAQ V+ R I               A + G++L       LI+KL+ LG P  A  
Sbjct: 52  GLLSSAQQVVQRFIASSPTVHDAISAVEFASASGMDLGPGISGELIRKLVDLGHPLSARE 111

Query: 131 VFAENVLGKGIVPVPASVSQSMIICYCRLGKLREALICMD 12
            + + V+ +GI P  +++  S++IC  +LGKL +A+   D
Sbjct: 112 FYHDLVVARGIEP-DSNIVNSLVICLAKLGKLDDAVKLFD 150


>ref|NP_201043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180621|sp|Q9LVA2.1|PP443_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g62370 gi|8809650|dbj|BAA97201.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332010218|gb|AED97601.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 982

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
 Frame = -3

Query: 455 CRLFFFDKNTNPIAPNSCSRPLTISPLPIDPINSQNHESLCFSLADQLISRGLIPSAQGV 276
           C  FF  +     A +S   P T +   +    S +H S C SL  +L  RGL+ SA+ V
Sbjct: 8   CYRFFKSRKATTCALSSELFPSTSAA--VFSAASGDHRSRCLSLIVKLGRRGLLDSAREV 65

Query: 275 IDRLIKHXXXXXXXXXXXXXAHSRGINLN---WSSLIQKLLTLGKPSMAEAVFAENVLGK 105
           I R+I               A   GI L+   + +LI+KL  +G+P +AE  + + V+G 
Sbjct: 66  IRRVIDGSSSISEAALVADFAVDNGIELDSSCYGALIRKLTEMGQPGVAETFYNQRVIGN 125

Query: 104 GIVPVPASVSQSMIICYCRLGKLREALICMDEV 6
           GIVP  +SV  SM+ C  +L +  EA   +D +
Sbjct: 126 GIVP-DSSVLDSMVFCLVKLRRFDEARAHLDRI 157