BLASTX nr result
ID: Cimicifuga21_contig00033247
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00033247
(357 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] 197 6e-49
ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2... 195 4e-48
ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ... 193 1e-47
ref|XP_002515077.1| pentatricopeptide repeat-containing protein,... 187 6e-46
ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi... 185 3e-45
>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 197 bits (502), Expect = 6e-49
Identities = 90/118 (76%), Positives = 104/118 (88%)
Frame = +2
Query: 2 KKLREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSY 181
KKL+EAYKLLCRMKVKGCNPDIVHYNTVILGF RE R LDA KV+EDMP NGC PNL+SY
Sbjct: 237 KKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSY 296
Query: 182 RTLVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
TLV+GLC+QG+ +EAK Y+EEM++KGF+PHFS FHAL+ G CN+GK+EEAC VL EM
Sbjct: 297 GTLVSGLCDQGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEM 354
Score = 75.5 bits (184), Expect = 4e-12
Identities = 38/113 (33%), Positives = 62/113 (54%)
Frame = +2
Query: 17 AYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYRTLVN 196
AY L +M + PD+ Y ++ G R+ + A+ ++EDM G +P+ +SY TL+N
Sbjct: 172 AYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLN 231
Query: 197 GLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
LC + L+EA + M KG P ++ ++ G C G+ +AC VLE+M
Sbjct: 232 SLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDM 284
Score = 59.7 bits (143), Expect = 2e-07
Identities = 34/116 (29%), Positives = 55/116 (47%)
Frame = +2
Query: 8 LREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYRT 187
+R A+ L G +PD YN ++ F A + M + P++ SYR
Sbjct: 134 IRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRI 193
Query: 188 LVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
L+ GLC + + A +E+M+ KG+ P S+ L+ LC K++EA +L M
Sbjct: 194 LMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRM 249
>ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1|
predicted protein [Populus trichocarpa]
Length = 475
Score = 195 bits (495), Expect = 4e-48
Identities = 88/118 (74%), Positives = 105/118 (88%)
Frame = +2
Query: 2 KKLREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSY 181
KKLREAYKLLCRMKVKGCNPDI+HYNTVILGF RE RA+DA KV+EDM NGC+PNLVSY
Sbjct: 290 KKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSY 349
Query: 182 RTLVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
RTLV GLC+QGM +EAK ++EEM+ KGF+PHF+ +AL+KG CN+GK+EEAC V+EE+
Sbjct: 350 RTLVGGLCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEEL 407
Score = 73.9 bits (180), Expect = 1e-11
Identities = 37/113 (32%), Positives = 60/113 (53%)
Frame = +2
Query: 17 AYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYRTLVN 196
AY L +M + PD+ Y ++ R+ + A+ ++EDM G +P+ +SY TL+N
Sbjct: 225 AYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLN 284
Query: 197 GLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
LC + L EA + M KG P ++ ++ G C G+ +AC VLE+M
Sbjct: 285 SLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDM 337
>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 451
Score = 193 bits (491), Expect = 1e-47
Identities = 90/115 (78%), Positives = 102/115 (88%)
Frame = +2
Query: 2 KKLREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSY 181
KKLREAYKLLCRMKVKGCNPDIVHYNTVILGF RE RA DA KVI+DM NGC+PNLVSY
Sbjct: 266 KKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSY 325
Query: 182 RTLVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVL 346
RTLVNGLC+ GML+EA Y+EEM++KGF+PHF+ HALVKG CN+G++EEAC VL
Sbjct: 326 RTLVNGLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIEEACGVL 380
Score = 74.3 bits (181), Expect = 9e-12
Identities = 35/103 (33%), Positives = 58/103 (56%)
Frame = +2
Query: 47 KGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYRTLVNGLCNQGMLEE 226
KG PD Y T++ R+ + +A K++ M GC P++V Y T++ G C +G +
Sbjct: 246 KGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHD 305
Query: 227 AKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
A +++M G P+ S+ LV GLC++G ++EA +EEM
Sbjct: 306 ACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEM 348
Score = 69.7 bits (169), Expect = 2e-10
Identities = 35/113 (30%), Positives = 58/113 (51%)
Frame = +2
Query: 17 AYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYRTLVN 196
AY L +M + PDI Y ++ R+ + A+ + EDM G +P+ +Y TL+N
Sbjct: 201 AYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLN 260
Query: 197 GLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
LC + L EA + M KG P ++ ++ G C G+ +AC V+++M
Sbjct: 261 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDM 313
Score = 57.0 bits (136), Expect = 2e-06
Identities = 34/116 (29%), Positives = 52/116 (44%)
Frame = +2
Query: 8 LREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYRT 187
LR A+ L G PD YN ++ F A + M + +P++ SYR
Sbjct: 163 LRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRI 222
Query: 188 LVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
L+ LC + + A E+M+ KGF P ++ L+ LC K+ EA +L M
Sbjct: 223 LMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRM 278
>ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545557|gb|EEF47061.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 262
Score = 187 bits (476), Expect = 6e-46
Identities = 88/116 (75%), Positives = 100/116 (86%)
Frame = +2
Query: 2 KKLREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSY 181
KKLREAYKLLCRMKVKGCNPDIVHYNT+I GF RE RA+DA KV+ DM NGC+PNLVSY
Sbjct: 78 KKLREAYKLLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARKVLGDMECNGCLPNLVSY 137
Query: 182 RTLVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLE 349
RTLV G+C+QGM +EAK Y+EEMI KGF+PHFS HALVKG C +GK+EEAC V+E
Sbjct: 138 RTLVAGICDQGMFDEAKSYLEEMILKGFSPHFSVSHALVKGFCIVGKIEEACGVVE 193
Score = 70.9 bits (172), Expect = 1e-10
Identities = 38/117 (32%), Positives = 61/117 (52%)
Frame = +2
Query: 5 KLREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYR 184
+L AYKL +M + PDI Y ++ G R + A+ ++EDM G +P+ ++Y
Sbjct: 9 ELSVAYKLFNQMFKRDVLPDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGFVPDCLTYT 68
Query: 185 TLVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
TL+N LC + L EA + M KG P ++ ++ G C G+ +A VL +M
Sbjct: 69 TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARKVLGDM 125
>ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 185 bits (470), Expect = 3e-45
Identities = 87/118 (73%), Positives = 99/118 (83%)
Frame = +2
Query: 2 KKLREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSY 181
KKLREAYKLLCRMKVKGCNPDI HYNTVI+GF RE RALDA K++EDM NGC+PNLVSY
Sbjct: 296 KKLREAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSY 355
Query: 182 RTLVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
+L NGLC+QGM E AK Y+EEM KGF PHFS HALVKG +IG++ E+CSVLE+M
Sbjct: 356 ESLTNGLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDM 413
Score = 80.1 bits (196), Expect = 2e-13
Identities = 39/113 (34%), Positives = 64/113 (56%)
Frame = +2
Query: 17 AYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYRTLVN 196
AY L +M + PD+ Y T++ G R+++ A+ ++EDM G IP+ +SY TL+N
Sbjct: 231 AYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLN 290
Query: 197 GLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
LC + L EA + M KG P + ++ ++ G C G+ +AC +LE+M
Sbjct: 291 SLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDM 343
Score = 63.2 bits (152), Expect = 2e-08
Identities = 36/116 (31%), Positives = 56/116 (48%)
Frame = +2
Query: 8 LREAYKLLCRMKVKGCNPDIVHYNTVILGFVREHRALDAIKVIEDMPENGCIPNLVSYRT 187
+R A+ L + G P+ YN +I F A + M E IP++ +YRT
Sbjct: 193 IRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRT 252
Query: 188 LVNGLCNQGMLEEAKIYMEEMITKGFAPHFSSFHALVKGLCNIGKMEEACSVLEEM 355
L+ GLC + + A +E+M+ KG+ P S+ L+ LC K+ EA +L M
Sbjct: 253 LMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRM 308