BLASTX nr result
ID: Cimicifuga21_contig00033156
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00033156
(449 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002527095.1| polyadenylate-binding protein, putative [Ric... 138 4e-31
ref|XP_002510185.1| polyadenylate-binding protein, putative [Ric... 134 1e-29
ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylat... 133 2e-29
emb|CBI29360.3| unnamed protein product [Vitis vinifera] 133 2e-29
ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis th... 132 3e-29
>ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding
protein, putative [Ricinus communis]
Length = 657
Score = 138 bits (348), Expect = 4e-31
Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKRSQRRHPTLKVKNLWE 269
YG++QF+ EE+A+ AI +D M LN Q+YV F+ ++ER R S + + VKNL E
Sbjct: 175 YGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGSPK-FTNVYVKNLSE 233
Query: 268 PLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIEKLDGHN-HEGK 92
+ + LE +FG YG + A++++D+TG+SRGFG+V F+D D+AA A+EKL+G H+ K
Sbjct: 234 TITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDK 293
Query: 91 VWSVGWAQTKSERPAELKLKFEEEEGNTRF 2
W VG AQ KSER AELK KFE+E N+R+
Sbjct: 294 AWYVGRAQRKSEREAELKAKFEQER-NSRY 322
Score = 59.7 bits (143), Expect = 2e-07
Identities = 41/132 (31%), Positives = 65/132 (49%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKRSQRRHPTLKVKNLWE 269
YGY+ F + A NA++ ++ LN I I RD + R + + +KNL
Sbjct: 88 YGYVNFSNPQDAANAMKALNFTPLNGKPIR----IMFSHRDPSIRKSG-YGNVFIKNLDS 142
Query: 268 PLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIEKLDGHNHEGKV 89
L + +L F +G V + D G+S+G+G+V FE++++A AI LDG K
Sbjct: 143 TLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQ 202
Query: 88 WSVGWAQTKSER 53
VG+ + ER
Sbjct: 203 VYVGFFVRQQER 214
Score = 58.9 bits (141), Expect = 4e-07
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQI-YVSPFICKEERD---RAKRSQRRHP----- 296
+G++ F ++A A+E ++ + + YV K ER+ +AK Q R+
Sbjct: 266 FGFVNFQDPDSAAAAVEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERL 325
Query: 295 ---TLKVKNLWEPLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAI 125
L +KNL + + D L+ LF +G + ++ D G S+G G+V F + A+ A+
Sbjct: 326 KAANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRAL 385
Query: 124 EKLDGHNHEGKVWSVGWAQTKSERPAELKLKF 29
++++G K V AQ K ER A L+ F
Sbjct: 386 KEMNGKMIGRKPLYVAIAQRKEERKARLQAHF 417
>ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding
protein, putative [Ricinus communis]
Length = 658
Score = 134 bits (336), Expect = 1e-29
Identities = 71/142 (50%), Positives = 96/142 (67%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKRSQRRHPTLKVKNLWE 269
YG++QFD EEAAQNAI+ ++ M+LN Q+YV F+ K ERD A S ++ + VKNL E
Sbjct: 167 YGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSA--SNKKFNNVYVKNLSE 224
Query: 268 PLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIEKLDGHNHEGKV 89
+ L+ +FG YG + AVI+RD G+S+ FG+V FE+ DAAA A+E L+G + K
Sbjct: 225 STTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKE 284
Query: 88 WSVGWAQTKSERPAELKLKFEE 23
W VG AQ KSER ELK +FE+
Sbjct: 285 WYVGKAQKKSERELELKSQFEQ 306
Score = 71.2 bits (173), Expect = 8e-11
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKRSQRRHP--------- 296
+G++ F+ +AA A+E ++ ++ + YV K ER+ +SQ
Sbjct: 257 FGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQ 316
Query: 295 --TLKVKNLWEPLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIE 122
L +KNL + + D L+ LF +G + ++RD +G SRG G+V F + A+ A+
Sbjct: 317 GVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALA 376
Query: 121 KLDGHNHEGKVWSVGWAQTKSERPAELKLKFEE 23
+++G K V AQ K ER A L+ +F +
Sbjct: 377 EMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 409
Score = 60.5 bits (145), Expect = 1e-07
Identities = 40/140 (28%), Positives = 67/140 (47%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKRSQRRHPTLKVKNLWE 269
YGY+ + + A A+++++ N I I RD + R + +KNL +
Sbjct: 80 YGYVNYTSPQDAARALDILNFTPFNNKPIR----IMYSHRDPSIRKSGTG-NIFIKNLDK 134
Query: 268 PLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIEKLDGHNHEGKV 89
+ L F +G + + D +G+SRG+G+V F++++AA AI+KL+G K
Sbjct: 135 TIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQ 194
Query: 88 WSVGWAQTKSERPAELKLKF 29
VG K ER + KF
Sbjct: 195 VYVGHFLRKHERDSASNKKF 214
>ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 133 bits (334), Expect = 2e-29
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKRSQRRHPTLKVKNLWE 269
YG++QF+QEEAAQNAI+ ++ M++N Q+YV F+ +ER+R S + + VKNL E
Sbjct: 603 YGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPK-FTNVYVKNLSE 661
Query: 268 PLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIEKLDGHN-HEGK 92
D L+ +FG+YG + AV++RD +G S+ FG+V F+ D+AA A+E L+G ++ K
Sbjct: 662 TTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDK 721
Query: 91 VWSVGWAQTKSERPAELKLKFEEEEGN 11
VW VG AQ KSER AEL+ KFE+E N
Sbjct: 722 VWYVGKAQRKSEREAELRAKFEQERKN 748
Score = 61.6 bits (148), Expect = 6e-08
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQI-YVSPFICKEERD---RAKRSQRRH------ 299
+G++ F ++A A+E ++ N ++ YV K ER+ RAK Q R
Sbjct: 694 FGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKF 753
Query: 298 --PTLKVKNLWEPLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAI 125
L +KNL + + D L+ LF +G + ++ D G S+G G+V F + A A+
Sbjct: 754 KGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRAL 813
Query: 124 EKLDGHNHEGKVWSVGWAQTKSERPAELKLKFEE 23
++G K V AQ K ER A L+ +F +
Sbjct: 814 NVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ 847
>emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 133 bits (334), Expect = 2e-29
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKRSQRRHPTLKVKNLWE 269
YG++QF+QEEAAQNAI+ ++ M++N Q+YV F+ +ER+R S + + VKNL E
Sbjct: 143 YGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPK-FTNVYVKNLSE 201
Query: 268 PLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIEKLDGHN-HEGK 92
D L+ +FG+YG + AV++RD +G S+ FG+V F+ D+AA A+E L+G ++ K
Sbjct: 202 TTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDK 261
Query: 91 VWSVGWAQTKSERPAELKLKFEEEEGN 11
VW VG AQ KSER AEL+ KFE+E N
Sbjct: 262 VWYVGKAQRKSEREAELRAKFEQERKN 288
Score = 61.6 bits (148), Expect = 6e-08
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQI-YVSPFICKEERD---RAKRSQRRH------ 299
+G++ F ++A A+E ++ N ++ YV K ER+ RAK Q R
Sbjct: 234 FGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKF 293
Query: 298 --PTLKVKNLWEPLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAI 125
L +KNL + + D L+ LF +G + ++ D G S+G G+V F + A A+
Sbjct: 294 KGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRAL 353
Query: 124 EKLDGHNHEGKVWSVGWAQTKSERPAELKLKFEE 23
++G K V AQ K ER A L+ +F +
Sbjct: 354 NVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ 387
>ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName:
Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2 gi|304109|gb|AAA61780.1|
poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein
[Arabidopsis thaliana] gi|7270360|emb|CAB80128.1|
poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative
polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana] gi|332660925|gb|AEE86325.1|
Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 132 bits (332), Expect = 3e-29
Identities = 64/142 (45%), Positives = 98/142 (69%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKRSQRRHPTLKVKNLWE 269
YG++Q+ EE+AQ AIE ++ M+LN Q+YV PF+ ++ERD + ++ + + VKNL E
Sbjct: 166 YGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD-STANKTKFTNVYVKNLAE 224
Query: 268 PLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIEKLDGHNHEGKV 89
D L+ FG YG++ AV+++D G+S+GFG+V FE+ D AA A+E L+GH + K
Sbjct: 225 STTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKE 284
Query: 88 WSVGWAQTKSERPAELKLKFEE 23
W VG AQ KSER EL++++E+
Sbjct: 285 WYVGRAQKKSERETELRVRYEQ 306
Score = 63.5 bits (153), Expect = 2e-08
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPFICKEERDRAKR-----------SQRR 302
+G++ F+ + A A+E ++ + + YV K ER+ R + +
Sbjct: 257 FGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQ 316
Query: 301 HPTLKVKNLWEPLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIE 122
L VKNL + D L+ +F +G V + ++RD G S+G G+V F + A A+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 376
Query: 121 KLDGHNHEGKVWSVGWAQTKSERPAELKLKFEE 23
+L G E K V AQ K +R L+ +F +
Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ 409
Score = 55.5 bits (132), Expect = 5e-06
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Frame = -2
Query: 448 YGYIQFDQEEAAQNAIEVMDRMVLNCSQIYVSPF-ICKEERDRAKRSQRRHPTLKVKNLW 272
YGY+ F + A AI+ LN +Y P + RD + R + +KNL
Sbjct: 79 YGYVNFTNPQDAARAIQE-----LNYIPLYGKPIRVMYSHRDPSVRRSGAG-NIFIKNLD 132
Query: 271 EPLYDGILEILFGRYGRVADAVIVRDKTGESRGFGYVVFEDKDAAATAIEKLDGHNHEGK 92
E + L F +G + + D +G+S+G+G+V + ++++A AIEKL+G K
Sbjct: 133 ESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK 192
Query: 91 VWSVGWAQTKSERPAEL-KLKF 29
VG + ER + K KF
Sbjct: 193 QVYVGPFLRRQERDSTANKTKF 214