BLASTX nr result
ID: Cimicifuga21_contig00033149
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00033149
(459 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002311400.1| predicted protein [Populus trichocarpa] gi|2... 176 2e-42
ref|XP_002519191.1| pentatricopeptide repeat-containing protein,... 168 5e-40
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar... 164 5e-39
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat... 164 7e-39
ref|XP_002885175.1| pentatricopeptide repeat-containing protein ... 156 1e-36
>ref|XP_002311400.1| predicted protein [Populus trichocarpa] gi|222851220|gb|EEE88767.1|
predicted protein [Populus trichocarpa]
Length = 548
Score = 176 bits (446), Expect = 2e-42
Identities = 86/152 (56%), Positives = 112/152 (73%)
Frame = -1
Query: 456 CLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKP 277
CLS + REA LLR +GE+GY PDSSTF+I M +K L++NETC +L+ FI RG K
Sbjct: 203 CLSEKCMPREAGALLRKLGERGYLPDSSTFNITMTCLLKGLDVNETCGILDKFIARGAKL 262
Query: 276 GFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKAL 97
GF+ YL+L++TL+KAG EG++YL++MV D L+S VFSYNMLID FC+A +M +A
Sbjct: 263 GFSFYLALIETLYKAGRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVF 322
Query: 96 TVMHKRGVAPNLVTFNTLISGYSKAGHISKEK 1
VM RGV+PNLVTFNTLISG+ K G + K +
Sbjct: 323 KVMQDRGVSPNLVTFNTLISGHCKDGEVHKAR 354
Score = 75.5 bits (184), Expect = 4e-12
Identities = 40/150 (26%), Positives = 78/150 (52%)
Frame = -1
Query: 456 CLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKP 277
C ++ +A + ++M ++G P+ TF+ L++ KD +++ +L +E G KP
Sbjct: 308 CFCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLISGHCKDGEVHKARELLQMLLELGLKP 367
Query: 276 GFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKAL 97
T+ S++ L +A ++ +MV G+ + +YN+LI C + R+ K L
Sbjct: 368 DIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLL 427
Query: 96 TVMHKRGVAPNLVTFNTLISGYSKAGHISK 7
M K G++P++ +FN LI + + G + K
Sbjct: 428 KDMRKDGISPDIFSFNALIQSFCRMGKVEK 457
Score = 72.0 bits (175), Expect = 5e-11
Identities = 43/143 (30%), Positives = 68/143 (47%)
Frame = -1
Query: 429 EAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKPGFNTYLSLL 250
+A ELL+M+ E G PD TFS ++ + ++ + +E G P TY L+
Sbjct: 352 KARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILI 411
Query: 249 KTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKRGVA 70
++L G V + L M DG+ +FS+N LI FC+ +E+A K M G+
Sbjct: 412 RSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSMSTLGLI 471
Query: 69 PNLVTFNTLISGYSKAGHISKEK 1
PN T+ L+ + G + K
Sbjct: 472 PNNYTYGALVKALFELGRCDEAK 494
Score = 61.6 bits (148), Expect = 6e-08
Identities = 36/141 (25%), Positives = 67/141 (47%)
Frame = -1
Query: 429 EAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKPGFNTYLSLL 250
E L M + D ++++L+ F K +N+ V +RG P T+ +L+
Sbjct: 282 EGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLI 341
Query: 249 KTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKRGVA 70
K G V + + L ++ GL +F+++ +ID C+A+ + A + M + G++
Sbjct: 342 SGHCKDGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGIS 401
Query: 69 PNLVTFNTLISGYSKAGHISK 7
PN VT+N LI G + +
Sbjct: 402 PNAVTYNILIRSLCLIGDVGR 422
>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 719
Score = 168 bits (425), Expect = 5e-40
Identities = 80/152 (52%), Positives = 109/152 (71%)
Frame = -1
Query: 456 CLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKP 277
CLS+ +++REA LL+ G+ G+ PDS+TF+I M IK +LNE CN+L+ F+E+G K
Sbjct: 366 CLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKF 425
Query: 276 GFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKAL 97
GF+TYL+L+K L+ AG V EGN Y ++MV DGLL +V SYNM+ID FC+ MM++A+
Sbjct: 426 GFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTF 485
Query: 96 TVMHKRGVAPNLVTFNTLISGYSKAGHISKEK 1
M +G+ PNLVTFNTLI GY K G I K +
Sbjct: 486 KEMQYKGIPPNLVTFNTLIDGYCKGGEICKSR 517
Score = 71.6 bits (174), Expect = 6e-11
Identities = 43/152 (28%), Positives = 75/152 (49%)
Frame = -1
Query: 456 CLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKP 277
C TS+ +A + M KG P+ TF+ L+ + K + ++ ++L +E G KP
Sbjct: 471 CFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKP 530
Query: 276 GFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKAL 97
T+ S++ L +A +E+ +MV GL + +YN+LI C + R+ K L
Sbjct: 531 DIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLL 590
Query: 96 TVMHKRGVAPNLVTFNTLISGYSKAGHISKEK 1
M G+ P++ +FN LI + + G + K
Sbjct: 591 RKMQTDGINPDVFSFNALIQSFCRMGKVEDAK 622
Score = 65.5 bits (158), Expect = 4e-09
Identities = 41/143 (28%), Positives = 69/143 (48%)
Frame = -1
Query: 429 EAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKPGFNTYLSLL 250
++ +LL M+ E G+ PD TFS ++ + + + + + G P TY L+
Sbjct: 515 KSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILI 574
Query: 249 KTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKRGVA 70
+L G V + L KM DG+ VFS+N LI FC+ +E A K + M G+
Sbjct: 575 HSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLI 634
Query: 69 PNLVTFNTLISGYSKAGHISKEK 1
P+ T+ I + ++G ++ K
Sbjct: 635 PDNYTYVAFIKVFCQSGRFNEAK 657
>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
[Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 659
Score = 164 bits (416), Expect = 5e-39
Identities = 78/151 (51%), Positives = 106/151 (70%)
Frame = -1
Query: 459 FCLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGK 280
+CLSN S+++E + LR +GE+GY PDSSTF+ M+ +K +L ETC + +GF+ RG K
Sbjct: 328 YCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVK 387
Query: 279 PGFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKA 100
PGFN YL L++ L A EG++YL +M DGLLSSV+SYN +ID C+A +E A+
Sbjct: 388 PGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMF 447
Query: 99 LTVMHKRGVAPNLVTFNTLISGYSKAGHISK 7
LT M RG++PNLVTFNT +SGYS G + K
Sbjct: 448 LTEMQDRGISPNLVTFNTFLSGYSVRGDVKK 478
Score = 63.9 bits (154), Expect = 1e-08
Identities = 34/131 (25%), Positives = 67/131 (51%)
Frame = -1
Query: 393 GYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKPGFNTYLSLLKTLFKAGMVEEG 214
G+ PD TFS+++ + + + + +E G +P TY L+++ G +
Sbjct: 490 GFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRS 549
Query: 213 NQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKRGVAPNLVTFNTLISG 34
+ KM +GL +++YN I FC+ +++A + L M + G+ P+ T++TLI
Sbjct: 550 VKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKA 609
Query: 33 YSKAGHISKEK 1
S++G S+ +
Sbjct: 610 LSESGRESEAR 620
Score = 58.9 bits (141), Expect = 4e-07
Identities = 35/150 (23%), Positives = 68/150 (45%)
Frame = -1
Query: 456 CLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKP 277
CL AA L M ++G P+ TF+ ++ + ++ + VL + G KP
Sbjct: 434 CLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKP 493
Query: 276 GFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKAL 97
T+ ++ L +A +++ +M+ G+ + +YN+LI C +R+ K
Sbjct: 494 DVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLF 553
Query: 96 TVMHKRGVAPNLVTFNTLISGYSKAGHISK 7
M + G++P+L +N I + K + K
Sbjct: 554 AKMKENGLSPDLYAYNATIQSFCKMRKVKK 583
Score = 55.5 bits (132), Expect = 4e-06
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Frame = -1
Query: 420 ELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIE-RGGKPGFNTYLSLLKT 244
ELL+ + + GY +L+ + + L L + CN + I G KP Y +++
Sbjct: 131 ELLKEIRDSGYRISDELMCVLIGSWGR-LGLAKYCNDVFAQISFLGMKPSTRLYNAVIDA 189
Query: 243 LFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKRGVAPN 64
L K+ ++ +M DG F+YN+LI C+ +++ A + + M + G PN
Sbjct: 190 LVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPN 249
Query: 63 LVTFNTLISGYSKAGHISK 7
+ T+ LI G+ AG + +
Sbjct: 250 VFTYTILIDGFLIAGRVDE 268
>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Cucumis sativus]
Length = 697
Score = 164 bits (415), Expect = 7e-39
Identities = 71/151 (47%), Positives = 113/151 (74%)
Frame = -1
Query: 459 FCLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGK 280
+CLSN S++ EA L G++GY P SSTF+I +A +K L+L TC V + ++ G K
Sbjct: 377 YCLSNNSMASEAVMFLIKTGKEGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVK 436
Query: 279 PGFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKA 100
PGF+TYL+L++ L+KAG +E GN+Y+D++++DGL+S+++SYNM+ID C+ + M+RAS+
Sbjct: 437 PGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEM 496
Query: 99 LTVMHKRGVAPNLVTFNTLISGYSKAGHISK 7
+H RG++PN+VT+NTLI G+ + G++ K
Sbjct: 497 FRDLHNRGISPNIVTYNTLIGGFCRNGNMDK 527
Score = 66.6 bits (161), Expect = 2e-09
Identities = 41/150 (27%), Positives = 72/150 (48%)
Frame = -1
Query: 456 CLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKP 277
CL A+E+ R + +G P+ T++ L+ F ++ N+++ +L +E +P
Sbjct: 483 CLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRP 542
Query: 276 GFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKAL 97
T+ SL+ L +A E +MV + +V +YN+LI FC + R++ L
Sbjct: 543 DIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLL 602
Query: 96 TVMHKRGVAPNLVTFNTLISGYSKAGHISK 7
M G+ P+ +FN LI GY+ K
Sbjct: 603 RQMKLHGIQPDTFSFNALIQGYTGKNRFQK 632
Score = 59.3 bits (142), Expect = 3e-07
Identities = 31/129 (24%), Positives = 62/129 (48%)
Frame = -1
Query: 393 GYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKPGFNTYLSLLKTLFKAGMVEEG 214
G + ++++++ K +++ + RG P TY +L+ + G +++
Sbjct: 469 GLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKA 528
Query: 213 NQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKRGVAPNLVTFNTLISG 34
+ L+ ++ +F++N LID CQA E A T M + V PN++T+N LI
Sbjct: 529 QELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICS 588
Query: 33 YSKAGHISK 7
+ G +S+
Sbjct: 589 FCAIGDVSR 597
Score = 54.7 bits (130), Expect = 8e-06
Identities = 37/135 (27%), Positives = 61/135 (45%)
Frame = -1
Query: 438 LSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKPGFNTYL 259
L+ E+ +G G P + ++ +M IK +L+ P TY
Sbjct: 209 LANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYN 268
Query: 258 SLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKR 79
L+ + + G+V+E + + +M G +VF+Y +LID F A+ A K L M +R
Sbjct: 269 ILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKER 328
Query: 78 GVAPNLVTFNTLISG 34
V PN T +L+ G
Sbjct: 329 NVVPNEATMRSLVHG 343
>ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297331015|gb|EFH61434.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 653
Score = 156 bits (395), Expect = 1e-36
Identities = 75/151 (49%), Positives = 101/151 (66%)
Frame = -1
Query: 459 FCLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGK 280
+CLSN S+++E A LR GE+GY PDSSTF+ M +K +L ETC + + F+ RG K
Sbjct: 322 YCLSNNSMAKETALFLRKTGERGYIPDSSTFNAAMNCLLKGHHLVETCGIFDCFVSRGAK 381
Query: 279 PGFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKA 100
PGFN YL L++ L A G++YL +M DGLLSSV++YN +ID C+A E A+
Sbjct: 382 PGFNGYLVLVQALLNAQRFSAGDRYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAAMF 441
Query: 99 LTVMHKRGVAPNLVTFNTLISGYSKAGHISK 7
LT M RG++PNL+TFNT +SGYS G + K
Sbjct: 442 LTEMQDRGISPNLITFNTFLSGYSAGGDVKK 472
Score = 62.8 bits (151), Expect = 3e-08
Identities = 35/133 (26%), Positives = 67/133 (50%)
Frame = -1
Query: 399 EKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKPGFNTYLSLLKTLFKAGMVE 220
E G PD TFS+++ + + + + +E G KP TY L+++ G
Sbjct: 482 EHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTG 541
Query: 219 EGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKRGVAPNLVTFNTLI 40
+ M GL ++++YN +I FC+ + +++A + L M + G+ P+ T++TLI
Sbjct: 542 RSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLI 601
Query: 39 SGYSKAGHISKEK 1
S++G S+ +
Sbjct: 602 KALSESGRESEAR 614
Score = 61.6 bits (148), Expect = 6e-08
Identities = 35/150 (23%), Positives = 69/150 (46%)
Frame = -1
Query: 456 CLSNTSLSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKP 277
CL + AA L M ++G P+ TF+ ++ + ++ + V+ +E G P
Sbjct: 428 CLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHGCNP 487
Query: 276 GFNTYLSLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKAL 97
T+ ++ L +A +++ +M+ G+ + +YN+LI C R+ K
Sbjct: 488 DVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLF 547
Query: 96 TVMHKRGVAPNLVTFNTLISGYSKAGHISK 7
M + G++PNL +N +I + K + K
Sbjct: 548 ANMKESGLSPNLYAYNAIIQSFCKMKKVKK 577
Score = 55.1 bits (131), Expect = 6e-06
Identities = 37/135 (27%), Positives = 64/135 (47%)
Frame = -1
Query: 438 LSREAAELLRMMGEKGYFPDSSTFSILMARFIKDLNLNETCNVLNGFIERGGKPGFNTYL 259
L++ ++ + G P + ++ ++ +K +LN KP TY
Sbjct: 154 LAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYN 213
Query: 258 SLLKTLFKAGMVEEGNQYLDKMVHDGLLSSVFSYNMLIDIFCQAEMMERASKALTVMHKR 79
L+ + K G+V+E + + +M +G +VF+Y +LID F A +E A K L +M R
Sbjct: 214 ILIHGVCKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVR 273
Query: 78 GVAPNLVTFNTLISG 34
+ PN T TL+ G
Sbjct: 274 KLNPNEATIRTLVHG 288