BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033115
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15377.1| putative non-LTR retroelement reverse transcripta...    67   2e-09
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar...    65   6e-09
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    61   1e-07
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    60   2e-07
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    59   4e-07

>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1044

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 34/89 (38%), Positives = 45/89 (50%)
 Frame = +1

Query: 1   EASGQIINLHKSQLIHHPKLPPRFVRILRHIFHIPCASSFPSYLGIPSILGRAKQDFFMP 180
           EASGQ+IN  KS +    K P       + I  I        YLG+P + GR K+D F  
Sbjct: 534 EASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQ 593

Query: 181 LIQRFHHRLASWKSNLLSKGGKLTLIQSV 267
           ++ R   R  SW S  LS  GK T+++SV
Sbjct: 594 IVDRIRQRSLSWSSRFLSTAGKTTMLKSV 622


>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267156|emb|CAB77868.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1077

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/88 (38%), Positives = 45/88 (51%)
 Frame = +1

Query: 4   ASGQIINLHKSQLIHHPKLPPRFVRILRHIFHIPCASSFPSYLGIPSILGRAKQDFFMPL 183
           ASGQ IN  K  +    K PP     ++ I  I        YLG+P + GR K+D F  +
Sbjct: 644 ASGQKINQAKYSITFSAKTPPAVRERVKQILLIQKEGGQGKYLGLPELFGRKKKDLFTAI 703

Query: 184 IQRFHHRLASWKSNLLSKGGKLTLIQSV 267
           + R   R  SW S  LS  GKLT+++SV
Sbjct: 704 VDRIKQRALSWSSRFLSSAGKLTMLKSV 731


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/88 (37%), Positives = 45/88 (51%)
 Frame = +1

Query: 4    ASGQIINLHKSQLIHHPKLPPRFVRILRHIFHIPCASSFPSYLGIPSILGRAKQDFFMPL 183
            ASGQ IN  KS +   PK P         I  +P       YLG+P++ G+ K+  F  L
Sbjct: 997  ASGQKINKDKSAICFSPKSPAAIKEACSAILDMPVVPCHERYLGLPTVSGKDKKKLFQSL 1056

Query: 184  IQRFHHRLASWKSNLLSKGGKLTLIQSV 267
              R  +R+  W+  LLSK GK  LI++V
Sbjct: 1057 PDRVWNRVHGWEGKLLSKAGKEVLIKTV 1084


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/88 (35%), Positives = 46/88 (52%)
 Frame = +1

Query: 4    ASGQIINLHKSQLIHHPKLPPRFVRILRHIFHIPCASSFPSYLGIPSILGRAKQDFFMPL 183
            ASGQ+IN+ KS +   P  PP    +L  I  IP  S   +YLG+P+   R+K+     +
Sbjct: 1318 ASGQLINVEKSSIFFSPNTPPEIAHLLSSIMQIPVVSDPGTYLGLPTFWHRSKKKALGFI 1377

Query: 184  IQRFHHRLASWKSNLLSKGGKLTLIQSV 267
                  ++  WK   LS+ GK  LI++V
Sbjct: 1378 KDSILRKVKGWKQATLSQAGKEVLIKAV 1405


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/88 (39%), Positives = 48/88 (54%)
 Frame = +1

Query: 4   ASGQIINLHKSQLIHHPKLPPRFVRILRHIFHIPCASSFPSYLGIPSILGRAKQDFFMPL 183
           ASGQ IN  KS++ +   +       L +I ++        YLGIPSI GR+K+  F  L
Sbjct: 713 ASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAIFDSL 772

Query: 184 IQRFHHRLASWKSNLLSKGGKLTLIQSV 267
           I R   +L  WK  LLS+ GK  L++SV
Sbjct: 773 IDRIWKKLQGWKEKLLSRAGKEVLLKSV 800