BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033114
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containi...   201   4e-50
ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containi...   191   7e-47
ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|2...   191   7e-47
ref|XP_002528404.1| pentatricopeptide repeat-containing protein,...   190   9e-47
ref|XP_002869359.1| pentatricopeptide repeat-containing protein ...   187   8e-46

>ref|XP_003634022.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
           chloroplastic-like [Vitis vinifera]
           gi|297745081|emb|CBI38673.3| unnamed protein product
           [Vitis vinifera]
          Length = 900

 Score =  201 bits (512), Expect = 4e-50
 Identities = 93/134 (69%), Positives = 113/134 (84%)
 Frame = -2

Query: 403 AMITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEV 224
           AMITIYTR+ LYDK+EE+I  +++D V+ N ENWLV +NAYSQQGKL+EAERVL SM   
Sbjct: 282 AMITIYTRMSLYDKAEEVIDFIQEDKVILNLENWLVLLNAYSQQGKLQEAERVLFSMQNA 341

Query: 223 GVPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNYKVA 44
           G  PN+VAYN LITGYGKAS+M++AQ IF+NL ++GLEPDESTYRSM+EGWGRA+NYK A
Sbjct: 342 GFSPNIVAYNMLITGYGKASNMDAAQHIFRNLKNVGLEPDESTYRSMIEGWGRAENYKEA 401

Query: 43  KWYYQELKNSGSEP 2
           +WYY ELK  G +P
Sbjct: 402 EWYYNELKRLGFKP 415



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
 Frame = -2

Query: 400  MITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEVG 221
            M+  Y + G  +    ++  MK+ +   +   + + IN Y +QG +EE   VL  + E G
Sbjct: 770  MLDSYGKEGQIESFRSVLRRMKESSCASDHYTYNIMINIYGEQGWIEEVANVLTELKESG 829

Query: 220  VPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNY-KVA 44
            + P++ +YNTLI  YG A  +E A  + + +   G++PD  TY +++    + D + +  
Sbjct: 830  LGPDLCSYNTLIKAYGIAGMVEDAVVLVKEMRENGIQPDRITYINLINALRKNDEFLEAV 889

Query: 43   KW 38
            KW
Sbjct: 890  KW 891


>ref|XP_004146719.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
           chloroplastic-like [Cucumis sativus]
          Length = 894

 Score =  191 bits (484), Expect = 7e-47
 Identities = 86/134 (64%), Positives = 110/134 (82%)
 Frame = -2

Query: 403 AMITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEV 224
           +MITIY R+ LYDK+EE+I LM++D V+PN ENW+V +NAY QQGK+EEAE V  SM E 
Sbjct: 274 SMITIYIRMNLYDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQQGKMEEAELVFASMEEA 333

Query: 223 GVPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNYKVA 44
           G   N++AYNTLITGYGKAS+M++AQR+F  + + G+EPDE+TYRSM+EGWGRA NYK+A
Sbjct: 334 GFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEGWGRAGNYKMA 393

Query: 43  KWYYQELKNSGSEP 2
           +WYY+ELK  G  P
Sbjct: 394 EWYYKELKRRGYMP 407



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
 Frame = -2

Query: 400  MITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEVG 221
            M+  Y +    +    ++  M++ +   +   + + IN Y +QG ++E   VL  +   G
Sbjct: 764  MLDAYGKECQMENFRSVLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACG 823

Query: 220  VPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNY-KVA 44
            + P++ +YNTLI  YG A  +E A ++ + +    +EPD  TY +M+    R D + +  
Sbjct: 824  LEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITYINMIRALQRNDQFLEAV 883

Query: 43   KW 38
            KW
Sbjct: 884  KW 885



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 35/130 (26%), Positives = 63/130 (48%)
 Frame = -2

Query: 400  MITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEVG 221
            M+ IY R G+  K  ++   + +  V  + E +   IN  S+   ++E  R+   ML+ G
Sbjct: 625  MLRIYQRCGMVHKLADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCG 684

Query: 220  VPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNYKVAK 41
              PN V  N ++  YGK+     A+ +F      GL  D  +Y +M+  +G+  ++K   
Sbjct: 685  FAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGL-VDAISYNTMISVYGKNKDFKNMS 743

Query: 40   WYYQELKNSG 11
               Q++K +G
Sbjct: 744  STVQKMKFNG 753


>ref|XP_002307852.1| predicted protein [Populus trichocarpa] gi|222853828|gb|EEE91375.1|
           predicted protein [Populus trichocarpa]
          Length = 670

 Score =  191 bits (484), Expect = 7e-47
 Identities = 89/134 (66%), Positives = 110/134 (82%)
 Frame = -2

Query: 403 AMITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEV 224
           AMITIYTRL LYDK+EE+IGLM+ D VV N ENWLV +NAYSQQGKLE+AE++L++M E 
Sbjct: 50  AMITIYTRLSLYDKAEEVIGLMRDDKVVLNLENWLVLLNAYSQQGKLEKAEQLLVAMQEA 109

Query: 223 GVPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNYKVA 44
              P +VAYN LITGYGKAS+M +AQR+F  + + GLEPD++TYRSM+EGWGR  NYK A
Sbjct: 110 KFSPTIVAYNILITGYGKASNMVAAQRLFSGIQNAGLEPDDTTYRSMIEGWGRVGNYKEA 169

Query: 43  KWYYQELKNSGSEP 2
           +WYY+ELK  G +P
Sbjct: 170 EWYYKELKRLGFKP 183



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
 Frame = -2

Query: 400 MITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEVG 221
           ++  Y + G  +    ++  MK  +   +   + + +N Y + G ++E   VL  + E G
Sbjct: 540 VLDAYGKEGQMESFRSVLQRMKNSSCTADHYTYNIMMNIYGELGWIDEVAGVLTELRECG 599

Query: 220 VPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNY-KVA 44
           + P++ +YNTLI  YG A  +E A  + + +   G+EPD+ TY +++    + D Y +  
Sbjct: 600 LGPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRQNGVEPDKITYTNLITTLQKNDKYLEAV 659

Query: 43  KW 38
           KW
Sbjct: 660 KW 661


>ref|XP_002528404.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532192|gb|EEF33997.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 955

 Score =  190 bits (483), Expect = 9e-47
 Identities = 90/134 (67%), Positives = 109/134 (81%)
 Frame = -2

Query: 403 AMITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEV 224
           AMITIYTRL LY+K+EEIIGLM +D V  N ENWLV +NAYSQQG+LEEAE+VL+ M E 
Sbjct: 335 AMITIYTRLSLYNKAEEIIGLMGEDKVAMNVENWLVLLNAYSQQGRLEEAEQVLVEMQEA 394

Query: 223 GVPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNYKVA 44
              PN+VA+NTLITGYGK S+M +AQR+F ++ + GLEPDE+TYRSM+EGWGR  NYK A
Sbjct: 395 SFSPNIVAFNTLITGYGKLSNMAAAQRLFLDIQNAGLEPDETTYRSMIEGWGRTGNYKEA 454

Query: 43  KWYYQELKNSGSEP 2
           +WYY+ELK  G  P
Sbjct: 455 EWYYKELKRLGYMP 468



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
 Frame = -2

Query: 400  MITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEVG 221
            M+  Y + G  +    ++  MKQ +   +   + + IN Y +QG ++E   VL  + E G
Sbjct: 825  MLDGYGKEGQMECFRNVLQRMKQSSYTSDHYTYNIMINIYGEQGWIDEVAGVLTELRECG 884

Query: 220  VPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNY-KVA 44
            + P++ +YNTLI  YG A  +E A  + + +   G+EPD+ TY +++    + D Y +  
Sbjct: 885  LRPDLCSYNTLIKAYGVAGMVEDAIDLVKEMRENGIEPDKITYSNLITALQKNDKYLEAV 944

Query: 43   KW 38
            KW
Sbjct: 945  KW 946


>ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315195|gb|EFH45618.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 906

 Score =  187 bits (475), Expect = 8e-46
 Identities = 89/134 (66%), Positives = 107/134 (79%)
 Frame = -2

Query: 403 AMITIYTRLGLYDKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEV 224
           +MITIYTRL LY+K+EE+I LMKQD V    ENWLV +NAYSQQGK+E+AE VL+SM   
Sbjct: 286 SMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGKMEQAESVLISMEAA 345

Query: 223 GVPPNVVAYNTLITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNYKVA 44
           G  PN++AYNTLITGYGK S ME+A+ +F  L  IGLEPDE++YRSM+EGWGRADNY+ A
Sbjct: 346 GFAPNIIAYNTLITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRSMIEGWGRADNYEEA 405

Query: 43  KWYYQELKNSGSEP 2
             YYQELK  G +P
Sbjct: 406 NHYYQELKRCGYKP 419



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
 Frame = -2

Query: 367  DKSEEIIGLMKQDNVVPNSENWLVQINAYSQQGKLEEAERVLMSMLEVGVPPNVVAYNTL 188
            +K   I+  MK+    P+   + + IN Y +QG ++E   VL  + E G+ P++ +YNTL
Sbjct: 787  EKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTL 846

Query: 187  ITGYGKASDMESAQRIFQNLPSIGLEPDESTYRSMVEGWGRADNY-KVAKW 38
            I  YG    +E A  + + +    + PD+ TY ++V    + D + +  KW
Sbjct: 847  IKAYGIGGMVEEAVGLVKEMRGKNITPDKVTYTNLVTALRKNDEFLEAIKW 897