BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00033080
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]            82   5e-14
ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis th...    82   5e-14
ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp....    79   4e-13
ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    78   7e-13
ref|XP_002522705.1| pentatricopeptide repeat-containing protein,...    77   1e-12

>dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 38/102 (37%), Positives = 64/102 (62%)
 Frame = -2

Query: 317 RLIHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMISGYN 138
           R IH  ++K GL I  D+++  S+   Y KC  +  A +LF  ++ P+  +WNAMISGY 
Sbjct: 242 RSIHASVVKMGLEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 137 LNHSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLKQ 12
            N  A + +++F EM+  +V PD+I++   + +C ++GSL+Q
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQ 341



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 49/87 (56%)
 Frame = -2

Query: 269 DIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMISGYNLNHSAHQGMELFLEML 90
           D+ + ++++D + KC  ++ A L+F         +W+AMI GY L+  A + + L+  M 
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 89  RYEVLPDSITMVMLLQSCVELGSLKQG 9
           R  V P+ +T + LL +C   G +++G
Sbjct: 417 RGGVHPNDVTFLGLLMACNHSGMVREG 443



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
 Frame = -2

Query: 326 QMIRLIHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAI--WNAM 153
           QM R +H  + + G +  +D+ +   ++  Y KC  + +A  +F  +  P   I  W A+
Sbjct: 136 QMGRFVHAQVFRLGFD--ADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAI 193

Query: 152 ISGYNLNHSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLKQG 9
           +S Y  N    + +E+F  M + +V PD + +V +L +   L  LKQG
Sbjct: 194 VSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241


>ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
           gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g12770 gi|11994419|dbj|BAB02421.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|332641723|gb|AEE75244.1| mitochondrial editing factor
           22 [Arabidopsis thaliana]
          Length = 694

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 38/102 (37%), Positives = 64/102 (62%)
 Frame = -2

Query: 317 RLIHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMISGYN 138
           R IH  ++K GL I  D+++  S+   Y KC  +  A +LF  ++ P+  +WNAMISGY 
Sbjct: 242 RSIHASVVKMGLEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 137 LNHSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLKQ 12
            N  A + +++F EM+  +V PD+I++   + +C ++GSL+Q
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQ 341



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 49/87 (56%)
 Frame = -2

Query: 269 DIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMISGYNLNHSAHQGMELFLEML 90
           D+ + ++++D + KC  ++ A L+F         +W+AMI GY L+  A + + L+  M 
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 89  RYEVLPDSITMVMLLQSCVELGSLKQG 9
           R  V P+ +T + LL +C   G +++G
Sbjct: 417 RGGVHPNDVTFLGLLMACNHSGMVREG 443



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
 Frame = -2

Query: 326 QMIRLIHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAI--WNAM 153
           QM R +H  + + G +  +D+ +   ++  Y KC  + +A  +F  +  P   I  W A+
Sbjct: 136 QMGRFVHAQVFRLGFD--ADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAI 193

Query: 152 ISGYNLNHSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLKQG 9
           +S Y  N    + +E+F +M + +V PD + +V +L +   L  LKQG
Sbjct: 194 VSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241


>ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330765|gb|EFH61184.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 38/102 (37%), Positives = 62/102 (60%)
 Frame = -2

Query: 317 RLIHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMISGYN 138
           R IH  ++K GL    D+++  S+   Y KC  +  A +LF  ++ P+  +WNAMISGY 
Sbjct: 242 RSIHASVMKMGLETEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299

Query: 137 LNHSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLKQ 12
            N  A   ++LF EM+  +V PD+I++   + +C ++GSL+Q
Sbjct: 300 KNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQ 341



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/87 (28%), Positives = 48/87 (55%)
 Frame = -2

Query: 269 DIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMISGYNLNHSAHQGMELFLEML 90
           D+ + ++++D + KC  ++ A  +F         +W+AMI GY L+  A + + L+  M 
Sbjct: 357 DVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAME 416

Query: 89  RYEVLPDSITMVMLLQSCVELGSLKQG 9
           R  V P+ +T + LL +C   G +++G
Sbjct: 417 RDGVHPNDVTFLGLLIACNHSGMVREG 443



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
 Frame = -2

Query: 326 QMIRLIHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAI--WNAM 153
           QM R +H  + + G    +D+ +   ++  Y KC  +  A  +F  +  P   I  W A+
Sbjct: 136 QMGRFVHAQVFRLGFE--ADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAI 193

Query: 152 ISGYNLNHSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLKQG 9
           +S Y  N    + +E+F +M + +V PD + +V +L +   L  L+QG
Sbjct: 194 VSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQG 241


>ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 38/106 (35%), Positives = 64/106 (60%)
 Frame = -2

Query: 326 QMIRLIHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMIS 147
           Q+ + IH  +IK  +++   + +GTS+VD Y KC  ++ A   F C++  +   W AM++
Sbjct: 201 QLGKCIHHQVIK--MDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVA 258

Query: 146 GYNLNHSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLKQG 9
           GY ++  A + ME+F +M+R  V P+ IT V +L +C   G LK+G
Sbjct: 259 GYGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEG 304


>ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538055|gb|EEF39667.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 501

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 39/99 (39%), Positives = 58/99 (58%)
 Frame = -2

Query: 311 IHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMISGYNLN 132
           IH  +IK GL    D+++  S+   Y KC  +  A L F  +R P+  +WNAMISGY  N
Sbjct: 268 IHGCVIKMGLEFEIDLLI--SLTAMYAKCGQVMFARLFFDQVRIPNLILWNAMISGYAKN 325

Query: 131 HSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLK 15
             A + +ELF  M+     PDSIT+  ++ +C ++GSL+
Sbjct: 326 GYAEEALELFRRMITMNFGPDSITITSVILACAQMGSLE 364



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/103 (29%), Positives = 52/103 (50%)
 Frame = -2

Query: 317 RLIHTIIIKKGLNIYSDIVLGTSMVDAYGKCLDIKAANLLFTCIRKPSAAIWNAMISGYN 138
           R +H    + GL   +D+ +   +V  Y KC  I  AN++F  +   S   W ++ISGY 
Sbjct: 165 RRVHGQAFRHGLE--ADVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYA 222

Query: 137 LNHSAHQGMELFLEMLRYEVLPDSITMVMLLQSCVELGSLKQG 9
            N    + + +F +M    V PD I +V +L++  ++  L+ G
Sbjct: 223 QNGQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHG 265