BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032901
         (485 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containi...   111   7e-23
ref|XP_002526186.1| pentatricopeptide repeat-containing protein,...   102   2e-20
ref|XP_002325018.1| predicted protein [Populus trichocarpa] gi|2...    98   6e-19
ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat...    69   2e-15
ref|XP_003610927.1| Pentatricopeptide repeat-containing protein ...    64   4e-15

>ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
           gi|297738773|emb|CBI28018.3| unnamed protein product
           [Vitis vinifera]
          Length = 695

 Score =  111 bits (277), Expect = 7e-23
 Identities = 64/161 (39%), Positives = 89/161 (55%)
 Frame = +1

Query: 1   LYTRGSAGTEAYTRLLIDCFQHNNAAQAKRLQNHMELYSYKSNGRFLQNRFLHLYGKSGK 180
           LY+RG+A +E+YTRLL+ C + N+  QAKRLQ HM+L+ Y+    FLQNR LHLY KSG 
Sbjct: 14  LYSRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGN 73

Query: 181 ISEARLLFDKNAPKRCFLMECNAFSLFQIGSCPEFSGDFQSYA*SGFGFFQ*HNLGFCWK 360
           +S+AR LFDK + +  F       +  + G+  +    F   +      +     GF   
Sbjct: 74  LSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGN 133

Query: 361 WLF**CFEFVY*NAKRGRMKPNEYIHASVLNACSQLLDVKR 483
                  EF     + G  +  +Y H SVL+ACSQLLD+KR
Sbjct: 134 GCSSQALEFFVRMQEEG-FESTDYTHVSVLHACSQLLDIKR 173


>ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534490|gb|EEF36190.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 446

 Score =  102 bits (255), Expect = 2e-20
 Identities = 65/169 (38%), Positives = 86/169 (50%), Gaps = 8/169 (4%)
 Frame = +1

Query: 1   LYTRGSAGTEAYTRLLIDCFQHNNAAQAKRLQNHMELYSYKSNGRFLQNRFLHLYGKSGK 180
           LYT G A  E YTRL ++CF+ N+  QAKRL+ HM+ + Y+ +  FLQNR LHLY K GK
Sbjct: 15  LYTHGPATHECYTRLALECFRANDVDQAKRLETHMDFHLYQPSDSFLQNRLLHLYAKLGK 74

Query: 181 ISEARLLFDKNAPKRCFLMECNAFSLFQIGSCPEF--------SGDFQSYA*SGFGFFQ* 336
           IS AR LFDK + +  F          + G   +         S D  SY     GF + 
Sbjct: 75  ISHARYLFDKMSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMPSRDSVSYNTVITGFAKN 134

Query: 337 HNLGFCWKWLF**CFEFVY*NAKRGRMKPNEYIHASVLNACSQLLDVKR 483
              G   +          +   +    KP EY H SVLNAC+QLLD+++
Sbjct: 135 GRAGKAVE---------AFVRMQTEGFKPTEYTHVSVLNACTQLLDLRK 174


>ref|XP_002325018.1| predicted protein [Populus trichocarpa] gi|222866452|gb|EEF03583.1|
           predicted protein [Populus trichocarpa]
          Length = 695

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 64/169 (37%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
 Frame = +1

Query: 1   LYTRGSAGTEAYTRLLIDCFQHNNAAQAKRLQNHMELYSYKSNGRFLQNRFLHLYGKSGK 180
           LYT G A  E YTRL ++CF+ ++  QAKRL++HM L+ +K N  F+ NR L+LY KSG+
Sbjct: 14  LYTNGPASHECYTRLALECFRASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGE 73

Query: 181 ISEARLLFDKNAPKRCFLMECNAFSLFQIGSCPEF--------SGDFQSYA*SGFGFFQ* 336
           IS AR LFD+   +  F          + G   +         S D  SY     GF   
Sbjct: 74  ISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGN 133

Query: 337 HNLGFCWKWLF**CFEFVY*NAKRGRMKPNEYIHASVLNACSQLLDVKR 483
              G             V+   ++  +KP EY H SVLNAC+QLLD++R
Sbjct: 134 GRGGPALG---------VFLRMQKEGLKPTEYTHVSVLNACTQLLDLRR 173


>ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
           gi|449493520|ref|XP_004159329.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score = 69.3 bits (168), Expect(2) = 2e-15
 Identities = 28/63 (44%), Positives = 47/63 (74%)
 Frame = +2

Query: 212 MPQRDVFSWNAMLSAYSKLDLVQNFQATFNHMPSRDLVSFNNIISGFVGNGCFDDALNLF 391
           +PQ ++FSWN +LSAYSKL  +Q+ Q  F+ MP+ D+VS+N+++SG+ GNG   +++ ++
Sbjct: 66  IPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVY 125

Query: 392 IRM 400
             M
Sbjct: 126 NMM 128



 Score = 37.7 bits (86), Expect(2) = 2e-15
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 16  SAGTEAYTRLLIDCFQHNNAAQAKRLQNHMELYSYKSNGR-FLQNRFLHLYGKSGKISEA 192
           S+ +  YT  L  C +  N AQ K+L  H  +    +N   FL N  ++ YGK G +  A
Sbjct: 2   SSSSNYYTAALKFCCEARNRAQVKKL--HCRIIRTLTNPETFLYNNLINTYGKLGDLKNA 59

Query: 193 RLLFD 207
           R +FD
Sbjct: 60  RNVFD 64


>ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512262|gb|AES93885.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 802

 Score = 64.3 bits (155), Expect(2) = 4e-15
 Identities = 28/68 (41%), Positives = 45/68 (66%)
 Frame = +2

Query: 209 KMPQRDVFSWNAMLSAYSKLDLVQNFQATFNHMPSRDLVSFNNIISGFVGNGCFDDALNL 388
           ++PQ+D+ SWN M+S Y+ +  ++  +  F+ MP RD  S+N +ISG+V  G + +AL+L
Sbjct: 123 EIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDL 182

Query: 389 FIRMQSGE 412
           F  MQ  E
Sbjct: 183 FRMMQENE 190



 Score = 41.6 bits (96), Expect(2) = 4e-15
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +1

Query: 34  YTRLLIDCFQHNNAAQAKRLQNHMELYSYKSNGRFLQNRFLHLYGKSGKISEARLLFDK 210
           Y+ L+  C +H      KR+  H +  ++   G  + NR +H+Y K G + +A++LFD+
Sbjct: 66  YSTLIAACLRHRKLELGKRVHAHTKASNFIP-GIVISNRLIHMYAKCGSLVDAQMLFDE 123