BLASTX nr result

ID: Cimicifuga21_contig00032895 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032895
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307793.1| cholesterol transport protein [Populus trich...    74   9e-12
emb|CBI37746.3| unnamed protein product [Vitis vinifera]               74   1e-11
emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]    74   1e-11
ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vit...    72   4e-11
ref|XP_003519693.1| PREDICTED: niemann-Pick C1 protein-like [Gly...    71   8e-11

>ref|XP_002307793.1| cholesterol transport protein [Populus trichocarpa]
           gi|222857242|gb|EEE94789.1| cholesterol transport
           protein [Populus trichocarpa]
          Length = 1274

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 36/57 (63%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
 Frame = +3

Query: 120 ERSNSQLLLSSDATT----SGEYCAMYDICGKRSDGKALNCPFGSQSVKPGELLSSK 278
           ERS+++LLL+ +A +    S EYCAMYDICG R DGK LNCP+GS SVKP +LLS K
Sbjct: 14  ERSDTRLLLTRNAVSRERHSEEYCAMYDICGAREDGKVLNCPYGSPSVKPDDLLSQK 70


>emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/57 (61%), Positives = 45/57 (78%), Gaps = 4/57 (7%)
 Frame = +3

Query: 120  ERSNSQLLLSSDATT----SGEYCAMYDICGKRSDGKALNCPFGSQSVKPGELLSSK 278
            E+++SQ LL  +AT+    S EYCAMYDICG+RSDGK LNCP+G+ +VKP E LS+K
Sbjct: 832  EKTDSQFLLFPNATSGERHSPEYCAMYDICGERSDGKVLNCPYGTPAVKPDEFLSAK 888


>emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
          Length = 1007

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/57 (61%), Positives = 45/57 (78%), Gaps = 4/57 (7%)
 Frame = +3

Query: 120  ERSNSQLLLSSDATT----SGEYCAMYDICGKRSDGKALNCPFGSQSVKPGELLSSK 278
            E+++SQ LL  +AT+    S EYCAMYDICG+RSDGK LNCP+G+ +VKP E LS+K
Sbjct: 846  EKTDSQFLLFPNATSGERHSPEYCAMYDICGERSDGKVLNCPYGTPAVKPDEFLSAK 902


>ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera]
          Length = 1309

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 33/44 (75%), Positives = 36/44 (81%)
 Frame = +3

Query: 147 SSDATTSGEYCAMYDICGKRSDGKALNCPFGSQSVKPGELLSSK 278
           S+    S EYCAMYDICGKRSDGK LNCP+GS SVKP +LLSSK
Sbjct: 56  SASERHSEEYCAMYDICGKRSDGKVLNCPYGSPSVKPDDLLSSK 99


>ref|XP_003519693.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max]
          Length = 1268

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = +3

Query: 156 ATTSGEYCAMYDICGKRSDGKALNCPFGSQSVKPGELLSSK 278
           A  S EYCAMYDICG+RSDGKALNCP+GS SVKP +LLS+K
Sbjct: 30  AKHSEEYCAMYDICGQRSDGKALNCPYGSPSVKPDDLLSAK 70


Top