BLASTX nr result

ID: Cimicifuga21_contig00032880 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032880
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus ...    58   9e-07
gb|ACZ74683.1| cyclin-like F-box [Phaseolus vulgaris]                  56   3e-06
gb|ACZ74682.1| cyclin-like F-box [Phaseolus vulgaris]                  55   5e-06

>ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 457

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/51 (60%), Positives = 36/51 (70%)
 Frame = -2

Query: 232 KDRISELPGEILCSILSLLTMKEAARTSTLSRRWSCMWKTSVESSSSLNLD 80
           +DRIS LP EIL SILS LT +EA+RTS LSRRW  +W      +SSLN D
Sbjct: 18  EDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTL----TSSLNFD 64


>gb|ACZ74683.1| cyclin-like F-box [Phaseolus vulgaris]
          Length = 384

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/63 (44%), Positives = 39/63 (61%)
 Frame = -2

Query: 229 DRISELPGEILCSILSLLTMKEAARTSTLSRRWSCMWKTSVESSSSLNLDILAMRGSEYS 50
           DRIS  P  ILC++LS L+ KEA  TS LS+RW+ +W+      S  +LD +   G+EY 
Sbjct: 29  DRISNFPHSILCNVLSFLSTKEAVATSVLSKRWNLLWR------SVPSLDFVHPGGAEYV 82

Query: 49  DSI 41
           D +
Sbjct: 83  DEV 85


>gb|ACZ74682.1| cyclin-like F-box [Phaseolus vulgaris]
          Length = 378

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/65 (43%), Positives = 38/65 (58%)
 Frame = -2

Query: 235 LKDRISELPGEILCSILSLLTMKEAARTSTLSRRWSCMWKTSVESSSSLNLDILAMRGSE 56
           + DRIS  P  ILC +LS L+ KEA  TS LS+RW+ +W+      S  +LD +   G E
Sbjct: 1   MPDRISNFPDSILCYVLSFLSTKEAVATSVLSKRWNLLWR------SVPSLDFVYPGGDE 54

Query: 55  YSDSI 41
           Y D +
Sbjct: 55  YVDEV 59


Top