BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032841
         (350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36977.3| unnamed protein product [Vitis vinifera]              110   9e-23
ref|XP_002528778.1| pentatricopeptide repeat-containing protein,...    89   4e-16
ref|NP_192184.1| pentatricopeptide repeat-containing protein [Ar...    87   1e-15
tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea m...    86   4e-15
ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t...    86   4e-15

>emb|CBI36977.3| unnamed protein product [Vitis vinifera]
          Length = 372

 Score =  110 bits (276), Expect = 9e-23
 Identities = 50/83 (60%), Positives = 65/83 (78%)
 Frame = -1

Query: 251 SANLNRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMP 72
           +ANLNR++N Y+RKG + DARKLFD+NP SR+ V WN+IIS Y + ++   AQ LFDEMP
Sbjct: 20  TANLNRLINGYIRKGNLRDARKLFDQNPTSRNTVIWNTIISAYIQNDEPHNAQNLFDEMP 79

Query: 71  SRDVVSWNTMLSGYQRVKNSEKV 3
            RD+VSWNT LSG +++KN E V
Sbjct: 80  DRDIVSWNTALSGLKKIKNPEGV 102



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/73 (36%), Positives = 46/73 (63%)
 Frame = -1

Query: 248 ANLNRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPS 69
           A+ N ++  Y+  G   +A+++F   PE R++VSW ++++GY    +   A+ +FD M  
Sbjct: 185 ASWNALVLGYMDLGDTDEAQRVFGLMPE-RNVVSWTTLVNGYIGNKKTSAARSVFDRMTE 243

Query: 68  RDVVSWNTMLSGY 30
           R+VVSW  M+SGY
Sbjct: 244 RNVVSWTVMISGY 256


>ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531781|gb|EEF33600.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 518

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 42/75 (56%), Positives = 54/75 (72%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N M+  YV+ G I  AR+LFDE PE RD  SWNS+ISGY     ++ A++LFD MPSRDV
Sbjct: 226 NSMIIGYVKNGDIGLARELFDEMPE-RDAFSWNSMISGYVGAGDVEAAKKLFDNMPSRDV 284

Query: 59  VSWNTMLSGYQRVKN 15
           VSWN M+ GY +++N
Sbjct: 285 VSWNCMIDGYAKIRN 299



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 36/75 (48%), Positives = 52/75 (69%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N M++ YV  G +  A+KLFD  P SRD+VSWN +I GY +   + +A+ LF++MP R++
Sbjct: 257 NSMISGYVGAGDVEAAKKLFDNMP-SRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNI 315

Query: 59  VSWNTMLSGYQRVKN 15
           VSWN ML+ Y + KN
Sbjct: 316 VSWNIMLALYLKCKN 330



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 36/70 (51%), Positives = 50/70 (71%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N +L+ Y   G+++DAR LF E+    D+VSWNS+I GY +   I +A++LFDEMP RD 
Sbjct: 195 NSLLHMYSACGRVLDARLLF-ESGFVLDLVSWNSMIIGYVKNGDIGLARELFDEMPERDA 253

Query: 59  VSWNTMLSGY 30
            SWN+M+SGY
Sbjct: 254 FSWNSMISGY 263


>ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g02750 gi|4263522|gb|AAD15348.1| hypothetical protein
           [Arabidopsis thaliana] gi|7269760|emb|CAB77760.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332656824|gb|AEE82224.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 43/77 (55%), Positives = 54/77 (70%)
 Frame = -1

Query: 260 RAGSANLNRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFD 81
           R  S + N M++ Y+R G+   ARKLFDE PE RD+VSWN +I GY R   +  A++LF+
Sbjct: 92  RWSSVSYNGMISGYLRNGEFELARKLFDEMPE-RDLVSWNVMIKGYVRNRNLGKARELFE 150

Query: 80  EMPSRDVVSWNTMLSGY 30
            MP RDV SWNTMLSGY
Sbjct: 151 IMPERDVCSWNTMLSGY 167



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 32/77 (41%), Positives = 55/77 (71%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N ++  Y + G+I +AR+LFDE+P  +D+ +W +++SGY +   ++ A++LFD+MP R+ 
Sbjct: 254 NTIITGYAQSGKIDEARQLFDESPV-QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNE 312

Query: 59  VSWNTMLSGYQRVKNSE 9
           VSWN ML+GY + +  E
Sbjct: 313 VSWNAMLAGYVQGERME 329



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 34/70 (48%), Positives = 52/70 (74%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N +L  +V+K +I++AR+ FD +   RD+VSWN+II+GY ++ +I  A+QLFDE P +DV
Sbjct: 223 NCLLGGFVKKKKIVEARQFFD-SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV 281

Query: 59  VSWNTMLSGY 30
            +W  M+SGY
Sbjct: 282 FTWTAMVSGY 291



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 30/68 (44%), Positives = 54/68 (79%)
 Frame = -1

Query: 233 MLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDVVS 54
           M++ Y++   + +AR+LFD+ PE R+ VSWN++++GY +  ++++A++LFD MP R+V +
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPE-RNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVST 345

Query: 53  WNTMLSGY 30
           WNTM++GY
Sbjct: 346 WNTMITGY 353



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 34/78 (43%), Positives = 51/78 (65%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N  ++ Y+R G+  +A ++F   P     VS+N +ISGY R  + ++A++LFDEMP RD+
Sbjct: 68  NVAISSYMRTGRCNEALRVFKRMPRWSS-VSYNGMISGYLRNGEFELARKLFDEMPERDL 126

Query: 59  VSWNTMLSGYQRVKNSEK 6
           VSWN M+ GY R +N  K
Sbjct: 127 VSWNVMIKGYVRNRNLGK 144



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/77 (44%), Positives = 51/77 (66%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N M+  YVR   +  AR+LF+  PE RD+ SWN+++SGY +   +  A+ +FD MP ++ 
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPE-RDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKND 188

Query: 59  VSWNTMLSGYQRVKNSE 9
           VSWN +LS Y  V+NS+
Sbjct: 189 VSWNALLSAY--VQNSK 203



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 32/76 (42%), Positives = 51/76 (67%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N ML  YV+  ++  A++LFD  P  R++ +WN++I+GY +  +I  A+ LFD+MP RD 
Sbjct: 316 NAMLAGYVQGERMEMAKELFDVMP-CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 374

Query: 59  VSWNTMLSGYQRVKNS 12
           VSW  M++GY +  +S
Sbjct: 375 VSWAAMIAGYSQSGHS 390



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 30/100 (30%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDI------------------------------V 150
           N ML+ Y + G + DAR +FD  PE  D+                              V
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV 220

Query: 149 SWNSIISGYTRTNQIQIAQQLFDEMPSRDVVSWNTMLSGY 30
           SWN ++ G+ +  +I  A+Q FD M  RDVVSWNT+++GY
Sbjct: 221 SWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGY 260


>tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 40/72 (55%), Positives = 56/72 (77%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N ML  YVR G+I +AR+LFD   E  D +SWN++++GY + +QI+ AQ++F++MP RDV
Sbjct: 235 NGMLAAYVRNGRIQEARELFDSRTEW-DAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV 293

Query: 59  VSWNTMLSGYQR 24
           VSWNTM+SGY R
Sbjct: 294 VSWNTMVSGYAR 305



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 30/78 (38%), Positives = 53/78 (67%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N M++ Y R+G + +AR+LFD  P  RD+ +W +I+SGY +   ++ A+++FD MP ++ 
Sbjct: 297 NTMVSGYARRGDMAEARRLFDVAP-IRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA 355

Query: 59  VSWNTMLSGYQRVKNSEK 6
           VSWN M++ Y + +  E+
Sbjct: 356 VSWNAMMAAYVQRRMMEE 373



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 31/70 (44%), Positives = 51/70 (72%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N ++  YV++ QI +A+K+F++ P+ RD+VSWN+++SGY R   +  A++LFD  P RDV
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQ-RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDV 324

Query: 59  VSWNTMLSGY 30
            +W  ++SGY
Sbjct: 325 FTWTAIVSGY 334



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 27/68 (39%), Positives = 50/68 (73%)
 Frame = -1

Query: 233 MLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDVVS 54
           +++ Y + G + +A+++FD  P+ ++ VSWN++++ Y +   ++ A++LFD MP R+V S
Sbjct: 330 IVSGYAQNGMLEEAKRVFDAMPD-KNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVAS 388

Query: 53  WNTMLSGY 30
           WNTML+GY
Sbjct: 389 WNTMLTGY 396



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 28/78 (35%), Positives = 50/78 (64%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N M+  YV++  + +A++LFD  P  R++ SWN++++GY +   +  A+ +F  MP +D 
Sbjct: 359 NAMMAAYVQRRMMEEAKELFDAMP-CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDA 417

Query: 59  VSWNTMLSGYQRVKNSEK 6
           VSW  ML+ Y ++  SE+
Sbjct: 418 VSWAAMLAAYSQIGFSEE 435



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 29/74 (39%), Positives = 45/74 (60%)
 Frame = -1

Query: 251 SANLNRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMP 72
           S + N M++ +   G +  AR  FD  PE +D VSWN +++ Y R  +IQ A++LFD   
Sbjct: 200 SVSYNVMISSHANHGLVSLARHYFDLAPE-KDAVSWNGMLAAYVRNGRIQEARELFDSRT 258

Query: 71  SRDVVSWNTMLSGY 30
             D +SWN +++GY
Sbjct: 259 EWDAISWNALMAGY 272



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 30/79 (37%), Positives = 43/79 (54%)
 Frame = -1

Query: 260 RAGSANLNRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFD 81
           R  S + N +L+       + D R LFDE P  +D VS+N +IS +     + +A+  FD
Sbjct: 166 RPDSFSYNTLLHALGVSSSLADVRALFDEMPV-KDSVSYNVMISSHANHGLVSLARHYFD 224

Query: 80  EMPSRDVVSWNTMLSGYQR 24
             P +D VSWN ML+ Y R
Sbjct: 225 LAPEKDAVSWNGMLAAYVR 243


>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 607

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 40/78 (51%), Positives = 52/78 (66%)
 Frame = -1

Query: 242 LNRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRD 63
           LN M+N Y+    +  A KL DEN  S +IVSWN +++ Y + NQI     LFD+MP +D
Sbjct: 11  LNYMINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKD 70

Query: 62  VVSWNTMLSGYQRVKNSE 9
            VSWN MLSG+QR +NSE
Sbjct: 71  AVSWNIMLSGFQRTRNSE 88



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 29/74 (39%), Positives = 52/74 (70%)
 Frame = -1

Query: 239 NRMLNDYVRKGQIIDARKLFDENPESRDIVSWNSIISGYTRTNQIQIAQQLFDEMPSRDV 60
           N +++ Y+  G+ +DA+  FD+ P+ R+I+SW ++++GY +  Q+  A+ +FD+M  R+V
Sbjct: 176 NALVSSYMELGKFVDAQTAFDQMPQ-RNIISWTTLVNGYVKNKQVNKARSVFDDMSERNV 234

Query: 59  VSWNTMLSGYQRVK 18
           VSW  M+SGY + K
Sbjct: 235 VSWTAMISGYVQNK 248



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
 Frame = -1

Query: 266 QIRAGSANLNRMLNDYVRKGQIIDARKLFDENPESR--------DIVSWNSIISGYTRTN 111
           Q+ A + +L   LN +V    I     L +E    R        D+ SWN+++S Y    
Sbjct: 127 QVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSYMELG 186

Query: 110 QIQIAQQLFDEMPSRDVVSWNTMLSGYQRVKNSEK 6
           +   AQ  FD+MP R+++SW T+++GY + K   K
Sbjct: 187 KFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNK 221