BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032674
         (864 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-...   357   3e-96
emb|CBI28088.3| unnamed protein product [Vitis vinifera]              352   8e-95
emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]   340   2e-91
ref|XP_002514332.1| DNA mismatch repair protein MSH6-2, putative...   319   6e-85
gb|ADG85113.1| mismatch repair protein [Solanum lycopersicum]         311   9e-83

>ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-2 [Vitis vinifera]
          Length = 1122

 Score =  357 bits (915), Expect = 3e-96
 Identities = 178/286 (62%), Positives = 218/286 (76%)
 Frame = +2

Query: 5    LTPSLSVTDFLDSSGVEEIIESKGYFKGSFTTLDIAAGGGMHHELTVCALGGLVTHLSRL 184
            LTP    TDF+D+S V  +I  KGYFKGS  + D A  G MHH+L +CALGGL+ HLSRL
Sbjct: 481  LTPLPLCTDFVDASKVRNLIHLKGYFKGSDNSWDHALDGVMHHDLALCALGGLLGHLSRL 540

Query: 185  MLNDVLCNGDIQPYLVYRGCLRLDGQSLVNLEIFSNNVDGGTEGTLYKYLDNCLTLSGKR 364
             L+D L NGDI PY VY GCLR+DGQ+LVNLEIFSNN DGG+ GTLYKYLDNC+T SGKR
Sbjct: 541  KLDDTLRNGDILPYQVYSGCLRMDGQTLVNLEIFSNNADGGSSGTLYKYLDNCVTSSGKR 600

Query: 365  LLRSWICHPLQDAGEINDRLNVVEGLIQNPEISYHVAHCLHKIPDVERLLGRVKAXXXXX 544
            LLR+WICHPL+D   IN+RLNVVE L+ N E    +A CL K+PD+ERLLG+VKA     
Sbjct: 601  LLRNWICHPLKDVQGINNRLNVVEHLMTNTETMSFIAQCLRKLPDLERLLGQVKASVQSS 660

Query: 545  XXXXXXXXGEKVLKQRVKAYGVLVKGLRVGIDLLFHLQKKEHEILSLSKILDVPLRSGSN 724
                    G+K+LKQRVK +G+LVKGLRV IDLL  LQK+ H + SLS++L +P+ SGS+
Sbjct: 661  ALLLLPFFGKKLLKQRVKVFGLLVKGLRVAIDLLVQLQKEGHIMPSLSEVLKLPMLSGSS 720

Query: 725  GLDELLTQFEATVDSDFPNYQDHVVSSSDAETLSVLTELFVENATR 862
            G+D+LLTQFEA +DSDFPNY++H V+ SDAE LS+L ELF+E  T+
Sbjct: 721  GVDKLLTQFEAAIDSDFPNYENHDVTDSDAEILSILIELFIEKTTQ 766


>emb|CBI28088.3| unnamed protein product [Vitis vinifera]
          Length = 1126

 Score =  352 bits (902), Expect = 8e-95
 Identities = 178/288 (61%), Positives = 218/288 (75%), Gaps = 2/288 (0%)
 Frame = +2

Query: 5    LTPSLSVTDFLDSSGVEEIIESKGYFKGSFTTLDIAAGGGMHHELTVCALGGLVTHLSRL 184
            LTP    TDF+D+S V  +I  KGYFKGS  + D A  G MHH+L +CALGGL+ HLSRL
Sbjct: 483  LTPLPLCTDFVDASKVRNLIHLKGYFKGSDNSWDHALDGVMHHDLALCALGGLLGHLSRL 542

Query: 185  MLNDVLCNGDIQPYLVYRGCLRLDGQSLVNLEIFSNNVDGGTEG--TLYKYLDNCLTLSG 358
             L+D L NGDI PY VY GCLR+DGQ+LVNLEIFSNN DGG+ G  TLYKYLDNC+T SG
Sbjct: 543  KLDDTLRNGDILPYQVYSGCLRMDGQTLVNLEIFSNNADGGSSGKCTLYKYLDNCVTSSG 602

Query: 359  KRLLRSWICHPLQDAGEINDRLNVVEGLIQNPEISYHVAHCLHKIPDVERLLGRVKAXXX 538
            KRLLR+WICHPL+D   IN+RLNVVE L+ N E    +A CL K+PD+ERLLG+VKA   
Sbjct: 603  KRLLRNWICHPLKDVQGINNRLNVVEHLMTNTETMSFIAQCLRKLPDLERLLGQVKASVQ 662

Query: 539  XXXXXXXXXXGEKVLKQRVKAYGVLVKGLRVGIDLLFHLQKKEHEILSLSKILDVPLRSG 718
                      G+K+LKQRVK +G+LVKGLRV IDLL  LQK+ H + SLS++L +P+ SG
Sbjct: 663  SSALLLLPFFGKKLLKQRVKVFGLLVKGLRVAIDLLVQLQKEGHIMPSLSEVLKLPMLSG 722

Query: 719  SNGLDELLTQFEATVDSDFPNYQDHVVSSSDAETLSVLTELFVENATR 862
            S+G+D+LLTQFEA +DSDFPNY++H V+ SDAE LS+L ELF+E  T+
Sbjct: 723  SSGVDKLLTQFEAAIDSDFPNYENHDVTDSDAEILSILIELFIEKTTQ 770


>emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]
          Length = 1090

 Score =  340 bits (872), Expect = 2e-91
 Identities = 174/286 (60%), Positives = 213/286 (74%)
 Frame = +2

Query: 5    LTPSLSVTDFLDSSGVEEIIESKGYFKGSFTTLDIAAGGGMHHELTVCALGGLVTHLSRL 184
            LTP    TDF+D+S V  +I  KGYFKGS  + D A  G MHH+L +CALGGL+ HLSRL
Sbjct: 453  LTPLPLCTDFVDASKVRNLIHLKGYFKGSDNSWDHALDGVMHHDLALCALGGLLGHLSRL 512

Query: 185  MLNDVLCNGDIQPYLVYRGCLRLDGQSLVNLEIFSNNVDGGTEGTLYKYLDNCLTLSGKR 364
             L+D L NGDI PY VY GCLR+DGQ+LVNLEIFSNN DG    TLYKYLDNC+T SGKR
Sbjct: 513  KLDDTLRNGDILPYQVYSGCLRMDGQTLVNLEIFSNNADG----TLYKYLDNCVTSSGKR 568

Query: 365  LLRSWICHPLQDAGEINDRLNVVEGLIQNPEISYHVAHCLHKIPDVERLLGRVKAXXXXX 544
            LLR+WICHPL+D   IN+RLNVVE L+   E    +A CL K+PD+ERLLG+VKA     
Sbjct: 569  LLRNWICHPLKDVQGINNRLNVVEHLMTXTETMSFIAQCLRKLPDLERLLGQVKASVQSS 628

Query: 545  XXXXXXXXGEKVLKQRVKAYGVLVKGLRVGIDLLFHLQKKEHEILSLSKILDVPLRSGSN 724
                    G+K+LKQRVK +G+LVKGLRV I LL  LQK+ H + SLS++L +P+ SGS+
Sbjct: 629  ALLLLPFFGKKLLKQRVKVFGLLVKGLRVAIXLLVXLQKEGHIMPSLSEVLKLPMLSGSS 688

Query: 725  GLDELLTQFEATVDSDFPNYQDHVVSSSDAETLSVLTELFVENATR 862
            G+D+LLTQFEA +DSDFPNY++H V+ SDAE LS+L ELF+E  T+
Sbjct: 689  GVDKLLTQFEAAIDSDFPNYENHDVTDSDAEILSILIELFIEKTTQ 734


>ref|XP_002514332.1| DNA mismatch repair protein MSH6-2, putative [Ricinus communis]
            gi|223546788|gb|EEF48286.1| DNA mismatch repair protein
            MSH6-2, putative [Ricinus communis]
          Length = 1089

 Score =  319 bits (817), Expect = 6e-85
 Identities = 164/285 (57%), Positives = 206/285 (72%)
 Frame = +2

Query: 5    LTPSLSVTDFLDSSGVEEIIESKGYFKGSFTTLDIAAGGGMHHELTVCALGGLVTHLSRL 184
            L P+   T+FLD+S V   I+SKGYF+GS +  +      MHH++T+ ALG LV HLSRL
Sbjct: 459  LNPAPPSTNFLDASEVRNSIQSKGYFRGSSSPWNNVFDSIMHHDITLNALGTLVDHLSRL 518

Query: 185  MLNDVLCNGDIQPYLVYRGCLRLDGQSLVNLEIFSNNVDGGTEGTLYKYLDNCLTLSGKR 364
            ML+DVL NGDI PY VY GCLR+DGQ+L+NLEIF+NN DGG  GTL+ YLDNC+T SGKR
Sbjct: 519  MLDDVLRNGDILPYQVYSGCLRMDGQTLINLEIFNNNSDGGLSGTLFNYLDNCVTSSGKR 578

Query: 365  LLRSWICHPLQDAGEINDRLNVVEGLIQNPEISYHVAHCLHKIPDVERLLGRVKAXXXXX 544
            LLR W+CHPL+    IN+RLNVVE L+   +I   ++  L KIPD+ER+LGRVKA     
Sbjct: 579  LLRKWMCHPLKSVEGINNRLNVVEDLMTQSDIMLVISQYLRKIPDIERMLGRVKASFQAS 638

Query: 545  XXXXXXXXGEKVLKQRVKAYGVLVKGLRVGIDLLFHLQKKEHEILSLSKILDVPLRSGSN 724
                    G+KVL+QRVK +G LVKGLR+GIDLL  LQK++  I   SK   +P  +GS 
Sbjct: 639  ASLVLPLIGKKVLRQRVKVFGSLVKGLRIGIDLLLLLQKEDRIISLFSKNFKLPELNGSA 698

Query: 725  GLDELLTQFEATVDSDFPNYQDHVVSSSDAETLSVLTELFVENAT 859
            GLD+ L+QFEA VDS+FPNYQ+H V+ S+AETL VL ELF+E A+
Sbjct: 699  GLDKFLSQFEAAVDSEFPNYQNHDVTDSEAETLFVLIELFIEKAS 743


>gb|ADG85113.1| mismatch repair protein [Solanum lycopersicum]
          Length = 782

 Score =  311 bits (798), Expect = 9e-83
 Identities = 160/285 (56%), Positives = 203/285 (71%)
 Frame = +2

Query: 5    LTPSLSVTDFLDSSGVEEIIESKGYFKGSFTTLDIAAGGGMHHELTVCALGGLVTHLSRL 184
            L+P     DF+D + V+  ++ KGYFK S    D A  G   H++ +CALG LV HL RL
Sbjct: 160  LSPVQPGADFVDPAEVKNFLDLKGYFKRSCNKWDHAFDGE-DHDVALCALGSLVNHLERL 218

Query: 185  MLNDVLCNGDIQPYLVYRGCLRLDGQSLVNLEIFSNNVDGGTEGTLYKYLDNCLTLSGKR 364
            MLN+VL NGDI  Y VY+GCL++DGQ+LVNLEIF+NNVDG   GTLY+YLDNC+TL GKR
Sbjct: 219  MLNEVLHNGDILSYEVYKGCLKMDGQTLVNLEIFNNNVDGSPSGTLYRYLDNCVTLPGKR 278

Query: 365  LLRSWICHPLQDAGEINDRLNVVEGLIQNPEISYHVAHCLHKIPDVERLLGRVKAXXXXX 544
            LLR WICHPL+D  +IN RL+VV+ L+ N  +S   A  L K+PD++RLLGRVKA     
Sbjct: 279  LLRKWICHPLKDVEKINHRLDVVDKLVDNATLS--TAQYLRKLPDLDRLLGRVKASIQSS 336

Query: 545  XXXXXXXXGEKVLKQRVKAYGVLVKGLRVGIDLLFHLQKKEHEILSLSKILDVPLRSGSN 724
                    G K+LKQR+K +G+LVKGLRVG+DLL  L +KE    SL+K++ +P+  G N
Sbjct: 337  EALLLPLIGAKILKQRIKVFGLLVKGLRVGLDLL-RLLQKECLTASLAKVVSLPVLDGDN 395

Query: 725  GLDELLTQFEATVDSDFPNYQDHVVSSSDAETLSVLTELFVENAT 859
            GLD+ LTQFEA +DSDFPN+QDH  +  D ETLS+L ELF+E AT
Sbjct: 396  GLDKFLTQFEAAIDSDFPNFQDHNATDFDTETLSILMELFIEKAT 440