BLASTX nr result
ID: Cimicifuga21_contig00032650
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00032650
(300 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat... 74 2e-11
ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containi... 62 4e-11
emb|CBI29222.3| unnamed protein product [Vitis vinifera] 62 4e-11
ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containi... 72 6e-11
>ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 73.6 bits (179), Expect = 2e-11
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = -2
Query: 287 RQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVN 108
+ G+ EA E+ + M +G PNV +YTS IHG C SG+LE+A F EM+++G+ +
Sbjct: 676 KHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAV 735
Query: 107 TYSVLVIRFAKEGELVK 57
TYSV++ F KEG++ K
Sbjct: 736 TYSVMIHGFCKEGQIDK 752
Score = 68.2 bits (165), Expect = 7e-10
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2
Query: 281 GKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTY 102
G+ EA E+ + M +G P+V +YTS IHG C SG+ ++A F EM++ G+ DV T+
Sbjct: 497 GREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTF 556
Query: 101 SVLVIRFAKEGELVKH*EFL 42
SVL+ KEG++++ E L
Sbjct: 557 SVLIDMLCKEGKVIEANELL 576
Score = 63.5 bits (153), Expect = 2e-08
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = -2
Query: 269 EALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTYSVLV 90
EA E+ + M G P+V +YTS IHG C SG+ E+A F EM++ GI SDV T S+L+
Sbjct: 139 EARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLI 198
Query: 89 IRFAKEGELVKH*EFL 42
KEG++++ E L
Sbjct: 199 DILCKEGKVIEANELL 214
Score = 58.5 bits (140), Expect = 5e-07
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -2
Query: 269 EALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTYSVLV 90
EA E+ + M G P+V +YT+ IHG C SG+ E+A F EM++ GI DV T SVL+
Sbjct: 320 EARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLI 379
Query: 89 IRFAKEGELVK 57
K+G++++
Sbjct: 380 DMLCKKGKVIE 390
Score = 54.3 bits (129), Expect(2) = 1e-06
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = -2
Query: 287 RQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVN 108
++GK+ EA E+L+VM Q G PN TYT+ + G C + R+ EA + F +M G DV
Sbjct: 565 KEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVV 624
Query: 107 TYSVLVIRFAKEGEL 63
TY L+ + G +
Sbjct: 625 TYGTLMKGLCQTGNI 639
Score = 22.7 bits (47), Expect(2) = 1e-06
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 84 LCKGGRIGEALRVSD*MVAGGHEPNTVS 1
LCK GR EA + M A G PN +S
Sbjct: 674 LCKHGREDEARELFKEMKALGVIPNVIS 701
>ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Cucumis sativus]
Length = 917
Score = 73.6 bits (179), Expect = 2e-11
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = -2
Query: 287 RQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVN 108
+ G+ EA E+ + M +G PNV +YTS IHG C SG+LE+A F EM+++G+ +
Sbjct: 832 KHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAV 891
Query: 107 TYSVLVIRFAKEGELVK 57
TYSV++ F KEG++ K
Sbjct: 892 TYSVMIHGFCKEGQIDK 908
Score = 68.2 bits (165), Expect = 7e-10
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2
Query: 281 GKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTY 102
G+ EA E+ + M +G P+V +YTS IHG C SG+ ++A F EM++ G+ DV T+
Sbjct: 653 GREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTF 712
Query: 101 SVLVIRFAKEGELVKH*EFL 42
SVL+ KEG++++ E L
Sbjct: 713 SVLIDMLCKEGKVIEANELL 732
Score = 65.1 bits (157), Expect = 6e-09
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = -2
Query: 269 EALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTYSVLV 90
EA E+ + M G P+V +YTS IHG C+SG+ E+A F EM++ GI DV T VL+
Sbjct: 183 EARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLI 242
Query: 89 IRFAKEGELVKH*EFL 42
F KEG++++ E L
Sbjct: 243 DMFCKEGKVIEANELL 258
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -2
Query: 269 EALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTYSVLV 90
EA E+ + M G P+V +YT+ IHG C SG+ E+A F EM++ GI DV T SVL+
Sbjct: 476 EARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLI 535
Query: 89 IRFAKEGELVK 57
K+G++++
Sbjct: 536 DMLCKKGKVIE 546
Score = 54.3 bits (129), Expect(2) = 1e-06
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = -2
Query: 287 RQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVN 108
++GK+ EA E+L+VM Q G PN TYT+ + G C + R+ EA + F +M G DV
Sbjct: 721 KEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVV 780
Query: 107 TYSVLVIRFAKEGEL 63
TY L+ + G +
Sbjct: 781 TYGTLMKGLCQTGNI 795
Score = 22.7 bits (47), Expect(2) = 1e-06
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 84 LCKGGRIGEALRVSD*MVAGGHEPNTVS 1
LCK GR EA + M A G PN +S
Sbjct: 830 LCKHGREDEARELFKEMKALGVIPNVIS 857
>ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 62.0 bits (149), Expect(2) = 4e-11
Identities = 27/70 (38%), Positives = 48/70 (68%)
Frame = -2
Query: 299 DAHGRQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGIS 120
+A + GK+++A+++ M ++G PNV TY + IHG C G L+EA R+ ++M+ G++
Sbjct: 321 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 380
Query: 119 SDVNTYSVLV 90
+ + TYSVL+
Sbjct: 381 ATLITYSVLI 390
Score = 30.4 bits (67), Expect(2) = 4e-11
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 81 CKGGRIGEALRVSD*MVAGGHEPNTVS 1
CK G +G+ALR+ MV+ G PN+V+
Sbjct: 429 CKMGNLGDALRIRGDMVSKGINPNSVT 455
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 26/75 (34%), Positives = 45/75 (60%)
Frame = -2
Query: 287 RQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVN 108
++GK +A+E+ + + G N+ T + IHG C +G ++EA+R K+M+ RG D
Sbjct: 535 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 594
Query: 107 TYSVLVIRFAKEGEL 63
TY+ L+ KEG++
Sbjct: 595 TYNTLISGCCKEGKV 609
Score = 23.9 bits (50), Expect(2) = 6e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 81 CKGGRIGEALRVSD*MVAGGHEPNT 7
CK G++ E ++ MV G EP+T
Sbjct: 604 CKEGKVEEGFKLRGEMVKQGIEPDT 628
Score = 56.6 bits (135), Expect = 2e-06
Identities = 30/73 (41%), Positives = 41/73 (56%)
Frame = -2
Query: 281 GKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTY 102
G+M + + VLQ MS PN TYT I G SG ++ A + EM+ +GI D TY
Sbjct: 782 GQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 841
Query: 101 SVLVIRFAKEGEL 63
+VL F KEG++
Sbjct: 842 NVLTNGFCKEGKI 854
>emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 62.0 bits (149), Expect(2) = 4e-11
Identities = 27/70 (38%), Positives = 48/70 (68%)
Frame = -2
Query: 299 DAHGRQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGIS 120
+A + GK+++A+++ M ++G PNV TY + IHG C G L+EA R+ ++M+ G++
Sbjct: 254 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 313
Query: 119 SDVNTYSVLV 90
+ + TYSVL+
Sbjct: 314 ATLITYSVLI 323
Score = 30.4 bits (67), Expect(2) = 4e-11
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 81 CKGGRIGEALRVSD*MVAGGHEPNTVS 1
CK G +G+ALR+ MV+ G PN+V+
Sbjct: 362 CKMGNLGDALRIRGDMVSKGINPNSVT 388
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 26/75 (34%), Positives = 45/75 (60%)
Frame = -2
Query: 287 RQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVN 108
++GK +A+E+ + + G N+ T + IHG C +G ++EA+R K+M+ RG D
Sbjct: 468 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 527
Query: 107 TYSVLVIRFAKEGEL 63
TY+ L+ KEG++
Sbjct: 528 TYNTLISGCCKEGKV 542
Score = 23.9 bits (50), Expect(2) = 6e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 81 CKGGRIGEALRVSD*MVAGGHEPNT 7
CK G++ E ++ MV G EP+T
Sbjct: 537 CKEGKVEEGFKLRGEMVKQGIEPDT 561
Score = 56.6 bits (135), Expect = 2e-06
Identities = 30/73 (41%), Positives = 41/73 (56%)
Frame = -2
Query: 281 GKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTY 102
G+M + + VLQ MS PN TYT I G SG ++ A + EM+ +GI D TY
Sbjct: 715 GQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 774
Query: 101 SVLVIRFAKEGEL 63
+VL F KEG++
Sbjct: 775 NVLTNGFCKEGKI 787
>ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 71.6 bits (174), Expect = 6e-11
Identities = 33/79 (41%), Positives = 51/79 (64%)
Frame = -2
Query: 299 DAHGRQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGIS 120
D RQG + EA +L M++ G P+V TY +FIHG C R+EEA+ +EM+ +G++
Sbjct: 397 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLA 456
Query: 119 SDVNTYSVLVIRFAKEGEL 63
DV +YS ++ F ++GEL
Sbjct: 457 PDVVSYSTIISGFCRKGEL 475
Score = 56.2 bits (134), Expect(2) = 2e-06
Identities = 28/77 (36%), Positives = 46/77 (59%)
Frame = -2
Query: 299 DAHGRQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGIS 120
DA+ + G++ EA +L+ MS G +PN+ +Y I+G C G ++EA +EM +G +
Sbjct: 257 DAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFT 316
Query: 119 SDVNTYSVLVIRFAKEG 69
D TY+ L+ + KEG
Sbjct: 317 PDEVTYNTLLNGYCKEG 333
Score = 20.4 bits (41), Expect(2) = 2e-06
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1
Query: 90 HSLCKGGRIGEALRVSD*MVAGGHEPN 10
+S+CK + A+ D M G PN
Sbjct: 362 NSMCKARNLNRAMEFFDQMRIRGLRPN 388
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/81 (35%), Positives = 43/81 (53%)
Frame = -2
Query: 287 RQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVN 108
R+G MKEA E+L+ M G P+ TY + ++G C G +A+ EM+ G+S V
Sbjct: 296 REGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVV 355
Query: 107 TYSVLVIRFAKEGELVKH*EF 45
TY+ L+ K L + EF
Sbjct: 356 TYTALINSMCKARNLNRAMEF 376
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = -2
Query: 278 KMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVNTYS 99
+M+EAL V+Q M + G P+V +Y++ I G C G L+ A + +EM+ +G+S D TYS
Sbjct: 439 RMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 498
Query: 98 VLV 90
L+
Sbjct: 499 SLI 501
Score = 54.7 bits (130), Expect = 8e-06
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = -2
Query: 287 RQGKMKEALEVLQVMSQIGEKPNVFTYTSFIHG*CNSGRLEEAIRWFKEMINRGISSDVN 108
R+G++ A ++ Q M + G P+ TY+S I G C RL EA +EM++ G+ D
Sbjct: 471 RKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEF 530
Query: 107 TYSVLVIRFAKEGELVK 57
TY+ L+ + EG+L K
Sbjct: 531 TYTTLINAYCVEGDLNK 547