BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032610
         (683 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   372   e-101
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   365   3e-99
ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   365   4e-99
ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chlor...   360   1e-97
ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   358   4e-97

>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis
           vinifera] gi|302144082|emb|CBI23187.3| unnamed protein
           product [Vitis vinifera]
          Length = 472

 Score =  372 bits (955), Expect = e-101
 Identities = 175/227 (77%), Positives = 194/227 (85%)
 Frame = +2

Query: 2   PKRFPRCYEIDWKSRIIAVDESYVVLDKPAGTSVGGTADNIEESCXXXXXXXXXXXXXXX 181
           PKRFPRCYEIDWKSRIIAV ESYVVLDKPAGTSVGGT DNIEESC               
Sbjct: 199 PKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTTPLR 258

Query: 182 XXHQIDNCTEGCVVLARTKEYCSVFHGKIREKGVKKLYRALAAAPVPLGIITHYMRPVNI 361
             HQIDNCTEGCVVLARTKEYCSVFHGKIREK VKKLYRALAAAP+P+GI+THYMRPVNI
Sbjct: 259 TTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPIGIVTHYMRPVNI 318

Query: 362 APRLVSKDFHRGWHLCQLEVLECREVPWPNVLIQEKYCVDDCDWPSKDVAYECKINLLTG 541
           APRL+S+DF +GW+LCQLEVLEC+EVPWP+ LI+EKYC++D  WP K+ A++CKINLLTG
Sbjct: 319 APRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKNSAFKCKINLLTG 378

Query: 542 RTHQIRAQFAAYGAPIVGDSMYMPAVVAERSSPGLNPFGEHGKLYPT 682
           RTHQIRAQ AA GAPIVGDSMYMPA +AE +SPGLNPFG++ K Y T
Sbjct: 379 RTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTT 425


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 476

 Score =  365 bits (938), Expect = 3e-99
 Identities = 172/225 (76%), Positives = 190/225 (84%)
 Frame = +2

Query: 2   PKRFPRCYEIDWKSRIIAVDESYVVLDKPAGTSVGGTADNIEESCXXXXXXXXXXXXXXX 181
           PKRFPRCY+IDWKSRIIAV + YVVLDKPAGTSVGGTADNIEESC               
Sbjct: 199 PKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCATFATRALGLTTPLK 258

Query: 182 XXHQIDNCTEGCVVLARTKEYCSVFHGKIREKGVKKLYRALAAAPVPLGIITHYMRPVNI 361
             HQIDNCTEGCVVLAR+KEYCSVFHGKIREK VKKLY ALAA+PVP+G+I +YMRPVNI
Sbjct: 259 TTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPVPVGVIKNYMRPVNI 318

Query: 362 APRLVSKDFHRGWHLCQLEVLECREVPWPNVLIQEKYCVDDCDWPSKDVAYECKINLLTG 541
           APRL+S++F  GWHLCQLEVLECR+VPWP+  I+EKY V+DC WPSKD AYECKINLLTG
Sbjct: 319 APRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPSKDFAYECKINLLTG 378

Query: 542 RTHQIRAQFAAYGAPIVGDSMYMPAVVAERSSPGLNPFGEHGKLY 676
           RTHQIRAQ AA GAP+VGDSMYMPA VAE ++PGLNPFG+H K Y
Sbjct: 379 RTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQY 423


>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
           max]
          Length = 473

 Score =  365 bits (937), Expect = 4e-99
 Identities = 167/223 (74%), Positives = 190/223 (85%)
 Frame = +2

Query: 2   PKRFPRCYEIDWKSRIIAVDESYVVLDKPAGTSVGGTADNIEESCXXXXXXXXXXXXXXX 181
           PKRFPR YEIDW+SRIIAV ESYVVLDKPAGTSVGGT DNIEESC               
Sbjct: 199 PKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTPLM 258

Query: 182 XXHQIDNCTEGCVVLARTKEYCSVFHGKIREKGVKKLYRALAAAPVPLGIITHYMRPVNI 361
             HQIDNCTEGCVVLARTK+YCS+FHGKIREK VKKLY ALAA+P+P GIITHYMRP+N+
Sbjct: 259 TTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLPTGIITHYMRPINM 318

Query: 362 APRLVSKDFHRGWHLCQLEVLECREVPWPNVLIQEKYCVDDCDWPSKDVAYECKINLLTG 541
           APRL+S+DF +GWHLCQLEVLECR++PWP   IQ+KYCV+DC WPS+D AYECKINLLTG
Sbjct: 319 APRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQDYAYECKINLLTG 378

Query: 542 RTHQIRAQFAAYGAPIVGDSMYMPAVVAERSSPGLNPFGEHGK 670
           +THQIRAQFAAY AP++GDSMYMPA +A+ S+PGLNPFG++ K
Sbjct: 379 KTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYKK 421


>ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
           max]
          Length = 473

 Score =  360 bits (925), Expect = 1e-97
 Identities = 166/223 (74%), Positives = 186/223 (83%)
 Frame = +2

Query: 2   PKRFPRCYEIDWKSRIIAVDESYVVLDKPAGTSVGGTADNIEESCXXXXXXXXXXXXXXX 181
           PKR PRCYEIDW+SRII V ESYVVLDKPAGTSVGGT DNIEESC               
Sbjct: 199 PKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTPLM 258

Query: 182 XXHQIDNCTEGCVVLARTKEYCSVFHGKIREKGVKKLYRALAAAPVPLGIITHYMRPVNI 361
             HQIDNCTEGCVVLARTKEYCSVFHGKIREK VKK Y ALAA P+P GIITHYMRP+++
Sbjct: 259 TTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTGIITHYMRPIDM 318

Query: 362 APRLVSKDFHRGWHLCQLEVLECREVPWPNVLIQEKYCVDDCDWPSKDVAYECKINLLTG 541
           APRL+S+DF +GWHLCQLEVLECR+VPWP   IQ+KYC++DC WPS+D AYECKINLLTG
Sbjct: 319 APRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDYAYECKINLLTG 378

Query: 542 RTHQIRAQFAAYGAPIVGDSMYMPAVVAERSSPGLNPFGEHGK 670
           +THQIRAQFAAY AP++GDSMYMPA +A  S+PGLNPFG++ K
Sbjct: 379 KTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYKK 421


>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
           predicted protein [Populus trichocarpa]
          Length = 470

 Score =  358 bits (920), Expect = 4e-97
 Identities = 166/225 (73%), Positives = 187/225 (83%)
 Frame = +2

Query: 2   PKRFPRCYEIDWKSRIIAVDESYVVLDKPAGTSVGGTADNIEESCXXXXXXXXXXXXXXX 181
           PKRFPRCY+IDWKSRII V ES+VVLDKPAGTSVGGT DNIEESC               
Sbjct: 193 PKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRALGLTAPLR 252

Query: 182 XXHQIDNCTEGCVVLARTKEYCSVFHGKIREKGVKKLYRALAAAPVPLGIITHYMRPVNI 361
             HQIDNCTEGCVVLART+E CSVFHGKIREK VKKLY ALAA+PVP+G++ HYMRP+N+
Sbjct: 253 TTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGVVNHYMRPINM 312

Query: 362 APRLVSKDFHRGWHLCQLEVLECREVPWPNVLIQEKYCVDDCDWPSKDVAYECKINLLTG 541
           APRLVS++F +GWHLCQLEV+EC+ VPWP+ +++EKYCV DC WPSKD AYECKINLLTG
Sbjct: 313 APRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHAYECKINLLTG 372

Query: 542 RTHQIRAQFAAYGAPIVGDSMYMPAVVAERSSPGLNPFGEHGKLY 676
           RTHQIRAQ AA GAP+VGDSMYMPA VAE  SPG NPFG++ K Y
Sbjct: 373 RTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQY 417