BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032395
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containi...   152   2e-35
emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]   152   2e-35
ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containi...   148   4e-34
ref|XP_002319538.1| predicted protein [Populus trichocarpa] gi|2...   146   2e-33
ref|XP_002884507.1| pentatricopeptide repeat-containing protein ...   144   1e-32

>ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  152 bits (385), Expect = 2e-35
 Identities = 75/109 (68%), Positives = 89/109 (81%)
 Frame = -2

Query: 328 VKPNSLTYSSSLLACSGLRALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMEDAC 149
           V PNSLTY SSL+ACSGL+A+ EGRQIH LV K G   DLCIESALMDMYSKC  +EDA 
Sbjct: 253 VDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAW 312

Query: 148 YIFDSAEEVDVISMTVILVGFAQNGLVEEALQIFVKMSKAGIMVDSNIV 2
            IF+SAEEVD +SMTVILVG AQNG  EE++Q+FVKM K G+++D N++
Sbjct: 313 KIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMI 361



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/91 (31%), Positives = 49/91 (53%)
 Frame = -2

Query: 310 TYSSSLLACSGLRALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMEDACYIFDSA 131
           T ++ L AC         + IHSLV   GY+ ++ + +AL+  Y +C C      +FD  
Sbjct: 158 TLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEM 217

Query: 130 EEVDVISMTVILVGFAQNGLVEEALQIFVKM 38
            E +V++ T ++ G +Q    EE+L++F KM
Sbjct: 218 SEKNVVTWTAVISGLSQGQFYEESLKLFGKM 248



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
 Frame = -2

Query: 331 LVKPNSLTYSSSLLACSGL-RALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMED 155
           ++ PN +   S++L   G+  +L  G+QIHSL++K  + S+  + + L++MYSKC  ++D
Sbjct: 355 VIDPNMI---SAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDD 411

Query: 154 ACYIFDSAEEVDVISMTVILVGFAQNGLVEEALQIFVKMSKAGI 23
           +  IF    + + +S   ++  FA++G    ALQ++ +M   G+
Sbjct: 412 SIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGV 455


>emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  152 bits (385), Expect = 2e-35
 Identities = 75/109 (68%), Positives = 89/109 (81%)
 Frame = -2

Query: 328 VKPNSLTYSSSLLACSGLRALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMEDAC 149
           V PNSLTY SSL+ACSGL+A+ EGRQIH LV K G   DLCIESALMDMYSKC  +EDA 
Sbjct: 139 VDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAW 198

Query: 148 YIFDSAEEVDVISMTVILVGFAQNGLVEEALQIFVKMSKAGIMVDSNIV 2
            IF+SAEEVD +SMTVILVG AQNG  EE++Q+FVKM K G+++D N++
Sbjct: 199 KIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMI 247



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/91 (31%), Positives = 49/91 (53%)
 Frame = -2

Query: 310 TYSSSLLACSGLRALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMEDACYIFDSA 131
           T ++ L AC         + IHSLV   GY+ ++ + +AL+  Y +C C      +FD  
Sbjct: 44  TLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEM 103

Query: 130 EEVDVISMTVILVGFAQNGLVEEALQIFVKM 38
            E +V++ T ++ G +Q    EE+L++F KM
Sbjct: 104 SEKNVVTWTAVISGLSQGQFYEESLKLFGKM 134



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/104 (30%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
 Frame = -2

Query: 331 LVKPNSLTYSSSLLACSGL-RALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMED 155
           ++ PN +   S++L   G+  +L  G+QIHSL++K  + S+  + + L++MYSKC  ++D
Sbjct: 241 VIDPNMI---SAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDD 297

Query: 154 ACYIFDSAEEVDVISMTVILVGFAQNGLVEEALQIFVKMSKAGI 23
           +  IF    + + +S   ++  FA++G    ALQ++ +M   G+
Sbjct: 298 SIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGV 341


>ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  148 bits (374), Expect = 4e-34
 Identities = 75/112 (66%), Positives = 91/112 (81%)
 Frame = -2

Query: 337 RELVKPNSLTYSSSLLACSGLRALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCME 158
           R  V PNSLTY S+L+ACSGL+AL EGR+IH L+ K G QSDLCIESALMD+YSKC  +E
Sbjct: 82  RGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLE 141

Query: 157 DACYIFDSAEEVDVISMTVILVGFAQNGLVEEALQIFVKMSKAGIMVDSNIV 2
           +A  IF+SAEE+D +S+TVILV F QNGL EEA+QIF++M K GI VD N+V
Sbjct: 142 EAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMV 193



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
 Frame = -2

Query: 328 VKPNSLTYSSSLLACSGL-RALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMEDA 152
           V PN +   S++L   G+  +LT G+QIHSL++K  +  +L + + L++MYSKC  + D+
Sbjct: 188 VDPNMV---SAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDS 244

Query: 151 CYIFDSAEEVDVISMTVILVGFAQNGLVEEALQIFVKMSKAGI 23
             +F    + + +S   ++  +A+ G    ALQ +  M   GI
Sbjct: 245 LQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGI 287


>ref|XP_002319538.1| predicted protein [Populus trichocarpa] gi|222857914|gb|EEE95461.1|
           predicted protein [Populus trichocarpa]
          Length = 577

 Score =  146 bits (368), Expect = 2e-33
 Identities = 73/110 (66%), Positives = 86/110 (78%)
 Frame = -2

Query: 331 LVKPNSLTYSSSLLACSGLRALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMEDA 152
           LV+PNSLTY SSL+ACSGL+AL EG QIH  V K G QSD C+ESALMDMYSKC  M D 
Sbjct: 155 LVEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDT 214

Query: 151 CYIFDSAEEVDVISMTVILVGFAQNGLVEEALQIFVKMSKAGIMVDSNIV 2
             IF+SA ++D +SMT+IL GFAQNG  EEA+Q FVKM +AG  +DSN+V
Sbjct: 215 LQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMV 264



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/79 (34%), Positives = 49/79 (62%)
 Frame = -2

Query: 259 GRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMEDACYIFDSAEEVDVISMTVILVGFAQ 80
           G+QIHSLV+K  + S+  + + L++MYSKC  +ED+  +F     ++ +S   ++  FA+
Sbjct: 280 GQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFAR 339

Query: 79  NGLVEEALQIFVKMSKAGI 23
           +G    ALQ++ +M   G+
Sbjct: 340 HGDGSRALQLYKEMRLKGV 358



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/92 (29%), Positives = 50/92 (54%)
 Frame = -2

Query: 310 TYSSSLLACSGLRALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCMEDACYIFDSA 131
           T ++ L AC         + +H L + +G+Q ++ + +AL+  Y KC        +FD  
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 130 EEVDVISMTVILVGFAQNGLVEEALQIFVKMS 35
            E +VI+ T I+ G  Q+ L  ++L++FV+M+
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMT 152


>ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330347|gb|EFH60766.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 676

 Score =  144 bits (362), Expect = 1e-32
 Identities = 69/112 (61%), Positives = 91/112 (81%)
 Frame = -2

Query: 337 RELVKPNSLTYSSSLLACSGLRALTEGRQIHSLVLKSGYQSDLCIESALMDMYSKCSCME 158
           R LV PNS+TY S+L ACSG + + EG+QIH+L+ K G +S+LCIESALMDMYSKC  +E
Sbjct: 249 RGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIE 308

Query: 157 DACYIFDSAEEVDVISMTVILVGFAQNGLVEEALQIFVKMSKAGIMVDSNIV 2
           DA  IF+S++EVD +SMTVILVG AQNG  EEA+Q F++M +AG+ +D+N+V
Sbjct: 309 DAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360